MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:115.5 nTPM
HPA Brain:546.0 nTPM
GTEx:115.5 nTPM
FANTOM5:457.7 Scaled Tags Per Million
Pig:311.9 nTPM
Mouse:157.2 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 546.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 486.2
2586 Male, age 75, left hemisphere 757.4
2666 Male, age 74, left hemisphere 590.8
2828 Female, age 72, unknown 520.0
1827 Male, age 72, unknown 503.4
2019 Male, age 18, unknown 490.5
2411 Female, age 72, unknown 404.8
1870 Female, age 42, unknown 404.3
2219 Male, age 76, both hemispheres 399.5
1830 Male, age 51, unknown 398.5
1833 Male, age 53, unknown 393.2
Dorsal raphe nucleus
nTPM: 432.5
2047 Male, age 72, unknown 477.5
1828 Male, age 53, unknown 451.6
2016 Female, age 72, unknown 434.9
2298 Female, age 72, unknown 400.3
2750 Male, age 76, both hemispheres 398.2
Inferior colliculus
nTPM: 397.6
2849 Male, age 72, unknown 418.0
1890 Male, age 53, unknown 405.3
1848 Female, age 42, unknown 399.8
2097 Female, age 72, unknown 367.2
Median raphe nucleus
nTPM: 395.4
2220 Male, age 76, midline 395.4
Periaquaductal grey, anterior
nTPM: 514.9
1795 Male, age 51, unknown 522.2
2502 Female, age 75, unknown 519.2
1947 Male, age 18, unknown 503.5
Periaquaductal grey, dorsal
nTPM: 434.5
2850 Male, age 76, both hemispheres 455.6
1840 Male, age 53, unknown 455.0
1831 Male, age 72, unknown 433.6
2464 Female, age 72, unknown 393.9
Periaquaductal grey, lateral
nTPM: 421.1
2053 Male, age 18, unknown 467.2
2140 Male, age 76, both hemispheres 428.2
2272 Male, age 74, both hemispheres 367.8
Pretectal area
nTPM: 514.9
1816 Male, age 51, unknown 691.9
2007 Male, age 72, unknown 639.7
1815 Male, age 53, unknown 624.3
1944 Female, age 72, unknown 605.2
1817 Female, age 42, unknown 591.2
2407 Male, age 75, both hemispheres 487.7
2667 Female, age 75, unknown 439.9
2825 Male, age 18, unknown 429.1
2316 Male, age 76, right hemisphere 386.1
2273 Male, age 74, both hemispheres 385.4
2224 Female, age 72, unknown 383.5
Red nucleus
nTPM: 502.9
2588 Male, age 74, left hemisphere 702.4
2584 Male, age 75, left hemisphere 628.7
2503 Female, age 72, unknown 585.9
2725 Female, age 75, unknown 511.9
2785 Male, age 18, unknown 500.2
1821 Female, age 72, unknown 486.7
1865 Male, age 51, unknown 468.1
1904 Male, age 53, unknown 460.1
2769 Male, age 72, unknown 431.7
1954 Female, age 42, unknown 428.2
2823 Male, age 76, right hemisphere 415.6
2227 Male, age 72, unknown 415.3
Substantia nigra
nTPM: 546.0
2665 Male, age 74, both hemispheres 636.7
1916 Female, age 42, unknown 586.5
1851 Male, age 51, unknown 563.4
1889 Female, age 72, unknown 549.5
2583 Male, age 75, right hemisphere 548.5
1941 Male, age 53, unknown 543.5
2590 Female, age 75, unknown 540.5
2699 Male, age 18, unknown 501.8
2241 Male, age 72, unknown 497.6
2409 Female, age 72, unknown 491.9
Superior colliculus
nTPM: 505.2
2664 Male, age 75, both hemispheres 599.0
2261 Male, age 18, unknown 562.6
2668 Female, age 75, unknown 555.5
2087 Female, age 72, unknown 535.5
2587 Male, age 74, left hemisphere 506.7
1796 Male, age 53, unknown 502.4
1995 Male, age 72, unknown 480.5
1913 Female, age 42, unknown 457.9
1839 Male, age 51, unknown 437.6
1895 Male, age 76, right hemisphere 414.4
Ventral tegmental area
nTPM: 446.0
2410 Female, age 72, unknown 484.6
1915 Female, age 42, unknown 467.8
1942 Male, age 51, unknown 447.2
2223 Female, age 72, unknown 432.2
2218 Male, age 76, both hemispheres 426.7
2021 Male, age 53, unknown 417.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 115.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.5
Samples: 183

Max nTPM: 275.0
Min nTPM: 29.9
Std nTPM: 44.3
Median nTPM: 106.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 275.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 262.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 247.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 231.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 226.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 225.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 222.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 219.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 217.6
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 200.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 199.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 457.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 457.7
FF:10158-103A5 76 years, female 457.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 311.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 255.2
Samples: 4

Max nTPM: 270.6
Min nTPM: 236.9
Sample A Female 266.3
Sample B Female 236.9
Sample C Male 270.6
Sample D Male 246.9
Midbrain
nTPM: 294.6
Samples: 4

Max nTPM: 397.6
Min nTPM: 209.7
Sample A Female 297.2
Sample B Female 209.7
Sample C Male 397.6
Sample D Male 273.9
Periaqueductal gray
nTPM: 195.1
Samples: 3

Max nTPM: 218.6
Min nTPM: 175.4
Sample B Female 191.4
Sample C Male 218.6
Sample D Male 175.4
Superior colliculi
nTPM: 311.9
Samples: 4

Max nTPM: 337.8
Min nTPM: 282.7
Sample A Female 282.7
Sample B Female 326.4
Sample C Male 337.8
Sample D Male 300.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 157.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 157.2
Samples: 4

Max nTPM: 168.1
Min nTPM: 137.4
Sample A Male 137.4
Sample B Male 157.6
Sample C Female 168.1
Sample D Female 165.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69885696 Antisense, RP_050512_03_C05, Mouse strain C57BL/6J (56 days, male) 2.5

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