MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.6 nTPM
HPA Brain:56.7 nTPM
GTEx:30.6 nTPM
FANTOM5:58.4 Scaled Tags Per Million
Pig:221.9 nTPM
Mouse:11.8 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
2666 Male, age 74, left hemisphere 65.8
1870 Female, age 42, unknown 52.8
2828 Female, age 72, unknown 50.1
2019 Male, age 18, unknown 49.3
1833 Male, age 53, unknown 44.1
1830 Male, age 51, unknown 41.8
2411 Female, age 72, unknown 39.1
2219 Male, age 76, both hemispheres 31.0
1827 Male, age 72, unknown 29.2
2586 Male, age 75, left hemisphere 27.3
Dorsal raphe nucleus
nTPM: 44.1
2750 Male, age 76, both hemispheres 53.9
1828 Male, age 53, unknown 44.5
2016 Female, age 72, unknown 43.5
2047 Male, age 72, unknown 42.0
2298 Female, age 72, unknown 36.6
Inferior colliculus
nTPM: 45.3
1890 Male, age 53, unknown 63.8
2097 Female, age 72, unknown 42.2
1848 Female, age 42, unknown 40.3
2849 Male, age 72, unknown 35.0
Median raphe nucleus
nTPM: 44.6
2220 Male, age 76, midline 44.6
Periaquaductal grey, anterior
nTPM: 46.7
1947 Male, age 18, unknown 54.9
2502 Female, age 75, unknown 45.3
1795 Male, age 51, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 35.7
2850 Male, age 76, both hemispheres 42.0
1831 Male, age 72, unknown 40.7
2464 Female, age 72, unknown 34.1
1840 Male, age 53, unknown 25.7
Periaquaductal grey, lateral
nTPM: 39.8
2140 Male, age 76, both hemispheres 42.5
2272 Male, age 74, both hemispheres 39.6
2053 Male, age 18, unknown 37.4
Pretectal area
nTPM: 36.1
1817 Female, age 42, unknown 51.3
2007 Male, age 72, unknown 45.5
1815 Male, age 53, unknown 40.3
2316 Male, age 76, right hemisphere 40.3
1944 Female, age 72, unknown 37.7
2667 Female, age 75, unknown 37.0
2224 Female, age 72, unknown 35.1
1816 Male, age 51, unknown 34.4
2825 Male, age 18, unknown 33.6
2273 Male, age 74, both hemispheres 23.4
2407 Male, age 75, both hemispheres 18.0
Red nucleus
nTPM: 56.7
1954 Female, age 42, unknown 69.4
1821 Female, age 72, unknown 68.1
1904 Male, age 53, unknown 67.6
2588 Male, age 74, left hemisphere 63.5
2769 Male, age 72, unknown 60.8
2227 Male, age 72, unknown 60.2
2823 Male, age 76, right hemisphere 59.5
1865 Male, age 51, unknown 57.0
2503 Female, age 72, unknown 55.4
2725 Female, age 75, unknown 44.4
2785 Male, age 18, unknown 44.0
2584 Male, age 75, left hemisphere 30.8
Substantia nigra
nTPM: 47.7
2665 Male, age 74, both hemispheres 84.3
1851 Male, age 51, unknown 52.2
2409 Female, age 72, unknown 49.8
2699 Male, age 18, unknown 48.9
2241 Male, age 72, unknown 47.3
1889 Female, age 72, unknown 46.6
2590 Female, age 75, unknown 44.0
1916 Female, age 42, unknown 42.9
1941 Male, age 53, unknown 34.4
2583 Male, age 75, right hemisphere 26.9
Superior colliculus
nTPM: 35.6
2087 Female, age 72, unknown 48.4
2587 Male, age 74, left hemisphere 45.6
2668 Female, age 75, unknown 42.5
1895 Male, age 76, right hemisphere 42.2
1839 Male, age 51, unknown 36.1
1913 Female, age 42, unknown 34.4
1995 Male, age 72, unknown 33.8
2261 Male, age 18, unknown 31.4
1796 Male, age 53, unknown 28.2
2664 Male, age 75, both hemispheres 13.1
Ventral tegmental area
nTPM: 43.3
1915 Female, age 42, unknown 46.1
2218 Male, age 76, both hemispheres 45.2
2410 Female, age 72, unknown 44.6
2021 Male, age 53, unknown 42.5
2223 Female, age 72, unknown 40.7
1942 Male, age 51, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.6
Samples: 183

Max nTPM: 198.5
Min nTPM: 1.5
Std nTPM: 21.4
Median nTPM: 27.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 198.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 132.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 113.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 96.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 84.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 74.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 68.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 67.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 66.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 61.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 58.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.4
FF:10158-103A5 76 years, female 58.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 221.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.3
Samples: 4

Max nTPM: 224.6
Min nTPM: 16.0
Sample A Female 46.4
Sample B Female 224.6
Sample C Male 16.0
Sample D Male 34.2
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 39.9
Min nTPM: 19.0
Sample A Female 39.9
Sample B Female 23.7
Sample C Male 23.2
Sample D Male 19.0
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.5
Min nTPM: 9.4
Sample B Female 11.5
Sample C Male 11.1
Sample D Male 9.4
Superior colliculi
nTPM: 221.9
Samples: 4

Max nTPM: 636.8
Min nTPM: 17.8
Sample A Female 205.7
Sample B Female 636.8
Sample C Male 17.8
Sample D Male 27.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 13.6
Min nTPM: 9.6
Sample A Male 9.6
Sample B Male 11.8
Sample C Female 13.6
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69201594 Antisense, RP_050317_03_C01, Mouse strain C57BL/6J (56 days, male) 2.1
72119593 Antisense, RP_051017_04_A08, Mouse strain C57BL/6J (56 days, male) 1.1

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