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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:97.8 nTPM
HPA Brain:81.5 nTPM
GTEx:97.8 nTPM
FANTOM5:213.6 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:219.1 nTPM
Allen mouse:6.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

81.5
Sample id Sample description nTPM
Amygdala
nTPM: 81.5
2514 Male, age 75, right hemisphere 91.3
2814 Male, age 76, right hemisphere 86.2
2695 Female, age 67, right hemisphere 85.0
1987 Female, age 91, left hemisphere 81.3
2517 Female, age 94, left hemisphere 63.9
Basal amygdala
nTPM: 72.6
1955 Male, age 76, both hemispheres 91.1
2609 Male, age 75, right hemisphere 90.6
2110 Male, age 80, left hemisphere 85.4
2243 Female, age 91, right hemisphere 72.6
2685 Female, age 94, left hemisphere 55.3
2827 Female, age 67, right hemisphere 40.5
Central amygdala
nTPM: 69.4
1905 Male, age 76, both hemispheres 80.2
2515 Male, age 75, right hemisphere 75.3
2239 Male, age 80, left hemisphere 74.3
2826 Female, age 94, left hemisphere 64.4
2701 Female, age 91, right hemisphere 52.8
Corticomedial amygdala
nTPM: 67.0
2428 Male, age 75, right hemisphere 76.3
2240 Male, age 76, both hemispheres 75.8
2242 Female, age 91, right hemisphere 74.8
2429 Female, age 94, left hemisphere 70.0
2829 Male, age 80, left hemisphere 54.3
2535 Female, age 67, right hemisphere 50.6
Lateral amygdala
nTPM: 68.7
2516 Male, age 75, right hemisphere 86.3
2256 Male, age 80, left hemisphere 84.6
1883 Male, age 76, both hemispheres 77.4
2534 Female, age 94, left hemisphere 67.8
2255 Female, age 91, right hemisphere 60.9
2830 Female, age 67, right hemisphere 35.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 97.8
Samples: 181

Max nTPM: 235.5
Min nTPM: 34.9
Std nTPM: 37.7
Median nTPM: 94.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 235.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 232.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 196.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 194.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 187.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 184.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 182.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 177.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 177.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 168.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 165.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 156.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 155.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 155.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 152.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 150.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 147.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 146.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 145.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 145.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 144.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 141.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 140.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 138.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 138.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 134.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 131.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 130.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 130.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 129.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 129.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 125.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 125.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 124.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 123.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 123.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 123.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 122.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 122.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 122.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 121.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 119.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 119.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 118.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 118.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 117.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 116.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 116.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 116.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 115.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 115.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 113.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 111.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 110.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 110.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 109.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 108.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 108.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 107.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 106.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 105.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 103.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 103.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 102.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 102.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 101.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 100.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 100.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 100.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 100.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 98.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 98.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 98.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 98.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 98.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 98.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 98.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 97.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 95.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 95.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 95.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 95.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 95.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 94.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 94.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 93.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 93.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 93.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 92.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 92.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 91.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 91.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 90.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 90.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 89.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 89.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 89.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 89.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 88.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 87.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 86.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 86.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 86.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 86.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 85.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 85.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 84.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 84.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 82.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 82.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 81.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 80.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 79.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 78.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 77.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 76.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 76.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 76.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 75.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 75.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 73.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 73.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 72.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 72.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 71.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 71.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 70.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 69.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 66.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 65.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 64.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 64.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 63.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 63.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 62.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 62.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 61.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 61.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 60.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 59.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 59.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 59.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 59.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 59.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 59.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 59.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 58.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 57.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 57.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 55.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 54.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 54.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 53.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 52.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 52.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 52.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 52.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 51.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 50.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 49.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 48.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 47.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 46.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 44.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 44.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 42.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 40.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 39.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 39.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 38.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 34.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

213.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 213.6
FF:10151-102I7 76 years, female 213.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.7
Pig sample Sample description nTPM
Amygdala
nTPM: 38.7
Samples: 4

Max nTPM: 48.6
Min nTPM: 29.6
Sample A Female 48.6
Sample B Female 29.6
Sample C Male 33.5
Sample D Male 42.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

219.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 219.1
Samples: 4

Max nTPM: 259.2
Min nTPM: 199.6
Sample A Male 199.6
Sample B Male 207.7
Sample C Female 259.2
Sample D Female 210.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.8
71836806 Antisense, RP_051017_02_A11, Mouse strain C57BL/6J (56 days, male) 9.7
413825 Antisense, RP_040809_01_G11, Mouse strain C57BL/6J (56 days, male) 3.8

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