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  • TISSUE

  • BRAIN

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:55.4 nTPM
HPA Brain:88.6 nTPM
GTEx:55.4 nTPM
FANTOM5:230.0 Scaled Tags Per Million
Pig:103.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 83.3
1981 Female, age 72, midline 111.2
2048 Male, age 55, midline 85.5
2194 Female, age 79, both hemispheres 80.5
2816 Male, age 47, midline 71.4
2565 Male, age 75, midline 67.9
Cervical spinal cord, dorsal horn
nTPM: 87.1
2721 Male, age 90, both hemispheres 135.2
2173 Female, age 72, unknown 103.1
2069 Male, age 47, both hemispheres 80.9
1877 Male, age 55, unknown 75.8
2296 Male, age 66, both hemispheres 67.4
2297 Male, age 75, both hemispheres 60.1
Cervical spinal cord, ventral horn
nTPM: 88.6
2098 Female, age 72, unknown 170.1
2809 Male, age 90, both hemispheres 92.4
2295 Male, age 66, both hemispheres 87.4
2068 Male, age 55, unknown 65.6
2480 Male, age 75, both hemispheres 62.8
2820 Female, age 79, both hemispheres 53.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.4
Samples: 204

Max nTPM: 183.5
Min nTPM: 10.5
Std nTPM: 26.2
Median nTPM: 51.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 183.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 180.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 157.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 129.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 115.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 113.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 109.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 109.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 107.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 102.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 99.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 96.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 95.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 92.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 91.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 90.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 89.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 89.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 89.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 88.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 85.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 85.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 85.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 85.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 85.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 84.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 83.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 80.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 77.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 77.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 77.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 76.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 76.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 76.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 75.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 75.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 75.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 74.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 73.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 73.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 73.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 71.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 70.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 70.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 69.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 69.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 68.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 67.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 67.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 66.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 66.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 66.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 66.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 65.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 65.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 64.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 64.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 64.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 63.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 62.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 61.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 61.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 61.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 60.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 60.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 60.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 60.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 60.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 60.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 60.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 60.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 60.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 59.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 58.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 58.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 58.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 58.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 57.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 57.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 57.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 57.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 57.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 56.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 56.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 56.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 56.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 55.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 55.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 55.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 54.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 54.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 53.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 53.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 53.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 53.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 53.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 52.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 51.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 51.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 51.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 51.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 51.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 51.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 51.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 51.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 51.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 51.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 50.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 50.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 50.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 50.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 50.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 49.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 48.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 48.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 48.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 48.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 48.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 47.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 47.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 46.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 46.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 46.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 45.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 45.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 45.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 44.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 44.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 44.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 44.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 43.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 43.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 43.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 43.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 43.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 42.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 42.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 42.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 42.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 42.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 41.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 41.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 41.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 40.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 40.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 40.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 39.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 39.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 38.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 38.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 38.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 38.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 38.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 38.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 38.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 37.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 37.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 37.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 36.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 36.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 36.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 36.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 36.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 36.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 35.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 35.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 34.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 34.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 33.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 33.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 33.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 32.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 32.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 32.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 31.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 31.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 31.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 31.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 31.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 30.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 30.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 29.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 29.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 28.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 27.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 27.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 26.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 26.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 25.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 25.3
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 24.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 22.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 22.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 20.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 20.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 18.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 18.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 17.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 16.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 16.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 14.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 13.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 13.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 10.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

230.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 230.0
FF:10181-103D1 60 years, female 265.0
FF:10159-103A6 76 years, female 195.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 93.7
Samples: 4

Max nTPM: 124.9
Min nTPM: 69.4
Sample A Female 69.4
Sample B Female 101.0
Sample C Male 124.9
Sample D Male 79.3
Ventral spinal cord
nTPM: 103.5
Samples: 4

Max nTPM: 118.8
Min nTPM: 89.0
Sample A Female 89.0
Sample B Female 95.1
Sample C Male 110.9
Sample D Male 118.8

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