MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.4 nTPM
HPA Brain:89.7 nTPM
GTEx:17.4 nTPM
FANTOM5:308.5 Scaled Tags Per Million
Pig:57.2 nTPM
Mouse:21.5 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 89.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.8
1830 Male, age 51, unknown 76.7
2411 Female, age 72, unknown 76.2
2019 Male, age 18, unknown 75.9
1833 Male, age 53, unknown 70.3
1870 Female, age 42, unknown 70.2
2666 Male, age 74, left hemisphere 56.5
2828 Female, age 72, unknown 47.6
2586 Male, age 75, left hemisphere 45.5
1827 Male, age 72, unknown 40.6
2219 Male, age 76, both hemispheres 38.8
Dorsal raphe nucleus
nTPM: 49.7
2750 Male, age 76, both hemispheres 88.4
1828 Male, age 53, unknown 44.7
2016 Female, age 72, unknown 42.9
2047 Male, age 72, unknown 41.7
2298 Female, age 72, unknown 30.7
Inferior colliculus
nTPM: 44.9
1848 Female, age 42, unknown 48.6
1890 Male, age 53, unknown 47.5
2097 Female, age 72, unknown 42.6
2849 Male, age 72, unknown 40.8
Median raphe nucleus
nTPM: 49.7
2220 Male, age 76, midline 49.7
Periaquaductal grey, anterior
nTPM: 32.8
2502 Female, age 75, unknown 43.6
1947 Male, age 18, unknown 33.6
1795 Male, age 51, unknown 21.3
Periaquaductal grey, dorsal
nTPM: 28.8
2464 Female, age 72, unknown 43.8
1831 Male, age 72, unknown 34.5
1840 Male, age 53, unknown 19.1
2850 Male, age 76, both hemispheres 17.8
Periaquaductal grey, lateral
nTPM: 27.8
2272 Male, age 74, both hemispheres 33.3
2053 Male, age 18, unknown 32.6
2140 Male, age 76, both hemispheres 17.4
Pretectal area
nTPM: 36.6
2316 Male, age 76, right hemisphere 52.3
1815 Male, age 53, unknown 48.4
1817 Female, age 42, unknown 46.4
2407 Male, age 75, both hemispheres 39.6
2007 Male, age 72, unknown 39.4
2825 Male, age 18, unknown 38.0
2224 Female, age 72, unknown 30.7
2273 Male, age 74, both hemispheres 30.1
1816 Male, age 51, unknown 29.1
1944 Female, age 72, unknown 25.5
2667 Female, age 75, unknown 23.5
Red nucleus
nTPM: 89.7
1821 Female, age 72, unknown 121.0
1865 Male, age 51, unknown 113.7
1904 Male, age 53, unknown 97.2
1954 Female, age 42, unknown 96.3
2227 Male, age 72, unknown 93.8
2769 Male, age 72, unknown 91.7
2823 Male, age 76, right hemisphere 89.0
2503 Female, age 72, unknown 88.4
2588 Male, age 74, left hemisphere 83.9
2785 Male, age 18, unknown 80.0
2725 Female, age 75, unknown 71.3
2584 Male, age 75, left hemisphere 49.9
Substantia nigra
nTPM: 46.3
2409 Female, age 72, unknown 62.6
2583 Male, age 75, right hemisphere 50.4
2590 Female, age 75, unknown 50.4
1941 Male, age 53, unknown 49.8
1889 Female, age 72, unknown 49.5
1851 Male, age 51, unknown 49.1
2241 Male, age 72, unknown 40.8
2699 Male, age 18, unknown 39.6
2665 Male, age 74, both hemispheres 36.8
1916 Female, age 42, unknown 34.0
Superior colliculus
nTPM: 49.4
1913 Female, age 42, unknown 68.7
1895 Male, age 76, right hemisphere 66.1
1995 Male, age 72, unknown 58.2
2587 Male, age 74, left hemisphere 58.1
2668 Female, age 75, unknown 57.3
1839 Male, age 51, unknown 52.1
1796 Male, age 53, unknown 36.4
2087 Female, age 72, unknown 33.7
2261 Male, age 18, unknown 32.7
2664 Male, age 75, both hemispheres 30.4
Ventral tegmental area
nTPM: 52.5
2223 Female, age 72, unknown 71.3
2410 Female, age 72, unknown 65.5
2218 Male, age 76, both hemispheres 46.0
2021 Male, age 53, unknown 45.7
1942 Male, age 51, unknown 45.1
1915 Female, age 42, unknown 41.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.4
Samples: 183

Max nTPM: 52.8
Min nTPM: 3.7
Std nTPM: 8.9
Median nTPM: 15.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 52.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 49.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 41.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 39.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 37.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 36.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 35.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 308.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 308.5
FF:10158-103A5 76 years, female 308.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.6
Samples: 4

Max nTPM: 80.2
Min nTPM: 41.5
Sample A Female 56.5
Sample B Female 41.5
Sample C Male 48.0
Sample D Male 80.2
Midbrain
nTPM: 57.2
Samples: 4

Max nTPM: 72.5
Min nTPM: 36.2
Sample A Female 69.0
Sample B Female 72.5
Sample C Male 36.2
Sample D Male 50.9
Periaqueductal gray
nTPM: 48.1
Samples: 3

Max nTPM: 64.5
Min nTPM: 37.3
Sample B Female 64.5
Sample C Male 37.3
Sample D Male 42.5
Superior colliculi
nTPM: 50.9
Samples: 4

Max nTPM: 57.6
Min nTPM: 45.8
Sample A Female 52.2
Sample B Female 45.8
Sample C Male 48.1
Sample D Male 57.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 25.2
Min nTPM: 17.2
Sample A Male 17.2
Sample B Male 20.2
Sample C Female 25.2
Sample D Female 23.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
70300840 Antisense, RP_050607_02_E03, Mouse strain C57BL/6J (56 days, male) 4.1
75081396 Antisense, RP_060315_03_C07, Mouse strain C57BL/6J (56 days, male) 1.8

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