MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA Brain:54.1 nTPM
GTEx:15.2 nTPM
FANTOM5:71.8 Scaled Tags Per Million
Pig:60.1 nTPM
Mouse:73.3 nTPM
Allen mouse:9.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.1
1827 Male, age 72, unknown 52.1
2411 Female, age 72, unknown 48.5
2219 Male, age 76, both hemispheres 47.9
1870 Female, age 42, unknown 45.4
2666 Male, age 74, left hemisphere 45.0
2586 Male, age 75, left hemisphere 44.0
1833 Male, age 53, unknown 43.8
2828 Female, age 72, unknown 42.8
1830 Male, age 51, unknown 41.5
2019 Male, age 18, unknown 40.4
Dorsal raphe nucleus
nTPM: 45.2
2047 Male, age 72, unknown 49.1
2750 Male, age 76, both hemispheres 46.9
2298 Female, age 72, unknown 46.4
1828 Male, age 53, unknown 43.3
2016 Female, age 72, unknown 40.4
Inferior colliculus
nTPM: 46.2
2849 Male, age 72, unknown 48.9
1848 Female, age 42, unknown 46.4
1890 Male, age 53, unknown 44.8
2097 Female, age 72, unknown 44.7
Median raphe nucleus
nTPM: 54.1
2220 Male, age 76, midline 54.1
Periaquaductal grey, anterior
nTPM: 44.7
1947 Male, age 18, unknown 48.2
1795 Male, age 51, unknown 43.6
2502 Female, age 75, unknown 42.2
Periaquaductal grey, dorsal
nTPM: 43.8
1840 Male, age 53, unknown 47.0
1831 Male, age 72, unknown 43.9
2850 Male, age 76, both hemispheres 43.7
2464 Female, age 72, unknown 40.6
Periaquaductal grey, lateral
nTPM: 42.4
2053 Male, age 18, unknown 46.0
2272 Male, age 74, both hemispheres 41.7
2140 Male, age 76, both hemispheres 39.6
Pretectal area
nTPM: 46.0
1817 Female, age 42, unknown 55.2
1944 Female, age 72, unknown 52.8
1816 Male, age 51, unknown 52.5
2007 Male, age 72, unknown 50.8
1815 Male, age 53, unknown 48.6
2224 Female, age 72, unknown 43.2
2407 Male, age 75, both hemispheres 42.9
2667 Female, age 75, unknown 42.6
2825 Male, age 18, unknown 41.9
2273 Male, age 74, both hemispheres 40.1
2316 Male, age 76, right hemisphere 35.4
Red nucleus
nTPM: 40.2
1821 Female, age 72, unknown 45.7
2725 Female, age 75, unknown 45.2
2503 Female, age 72, unknown 42.6
1865 Male, age 51, unknown 41.0
2785 Male, age 18, unknown 40.4
2584 Male, age 75, left hemisphere 40.1
2588 Male, age 74, left hemisphere 39.9
1954 Female, age 42, unknown 38.0
1904 Male, age 53, unknown 37.5
2769 Male, age 72, unknown 37.3
2823 Male, age 76, right hemisphere 37.3
2227 Male, age 72, unknown 37.1
Substantia nigra
nTPM: 51.1
1916 Female, age 42, unknown 65.3
1941 Male, age 53, unknown 58.1
1851 Male, age 51, unknown 53.5
2409 Female, age 72, unknown 53.4
1889 Female, age 72, unknown 50.6
2699 Male, age 18, unknown 49.3
2241 Male, age 72, unknown 48.5
2665 Male, age 74, both hemispheres 46.9
2583 Male, age 75, right hemisphere 43.2
2590 Female, age 75, unknown 42.5
Superior colliculus
nTPM: 43.7
2668 Female, age 75, unknown 52.0
1796 Male, age 53, unknown 47.6
2087 Female, age 72, unknown 45.9
1895 Male, age 76, right hemisphere 45.8
2261 Male, age 18, unknown 45.8
1913 Female, age 42, unknown 43.7
1839 Male, age 51, unknown 42.1
2587 Male, age 74, left hemisphere 41.8
2664 Male, age 75, both hemispheres 36.8
1995 Male, age 72, unknown 35.2
Ventral tegmental area
nTPM: 47.7
2218 Male, age 76, both hemispheres 59.6
2410 Female, age 72, unknown 55.5
1915 Female, age 42, unknown 46.5
1942 Male, age 51, unknown 43.4
2223 Female, age 72, unknown 42.4
2021 Male, age 53, unknown 38.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.2
Samples: 183

Max nTPM: 30.0
Min nTPM: 6.8
Std nTPM: 3.6
Median nTPM: 14.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 30.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 27.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 25.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 24.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 22.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 22.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 22.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 71.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.8
FF:10158-103A5 76 years, female 71.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.3
Samples: 4

Max nTPM: 63.1
Min nTPM: 50.6
Sample A Female 55.9
Sample B Female 51.6
Sample C Male 63.1
Sample D Male 50.6
Midbrain
nTPM: 60.2
Samples: 4

Max nTPM: 67.0
Min nTPM: 52.6
Sample A Female 52.6
Sample B Female 58.1
Sample C Male 67.0
Sample D Male 62.9
Periaqueductal gray
nTPM: 55.3
Samples: 3

Max nTPM: 55.9
Min nTPM: 54.6
Sample B Female 55.9
Sample C Male 54.6
Sample D Male 55.5
Superior colliculi
nTPM: 55.4
Samples: 4

Max nTPM: 61.7
Min nTPM: 48.0
Sample A Female 52.9
Sample B Female 48.0
Sample C Male 61.7
Sample D Male 59.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 77.8
Min nTPM: 69.0
Sample A Male 69.0
Sample B Male 74.6
Sample C Female 77.8
Sample D Female 71.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
68845807 Antisense, RP_050224_02_E10, Mouse strain C57BL/6J (56 days, male) 9.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo