We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
12.8
nTPM
HPA Brain:
86.7
nTPM
GTEx:
12.8
nTPM
FANTOM5:
55.0
Scaled Tags Per Million
Pig:
102.3
nTPM
Mouse:
130.3
nTPM
Allen mouse:
10.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA017931
Antibody HPA020289
Glial cells
Low
Not detected
Neuronal cells
Low
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 84.2
2621
Female, age 67, right hemisphere
115.7
1898
Male, age 80, left hemisphere
83.1
1855
Male, age 76, left hemisphere
82.0
2148
Female, age 91, left hemisphere
76.6
2529
Female, age 94, left hemisphere
74.6
1911
Female, age 85, right hemisphere
72.9
Dentate gyrus nTPM: 84.0
2530
Female, age 94, left hemisphere
106.8
1927
Female, age 91, both hemispheres
94.2
2010
Male, age 76, both hemispheres
89.0
2246
Female, age 85, both hemispheres
79.6
2531
Female, age 67, both hemispheres
72.5
2528
Male, age 74, both hemispheres
62.2
Entorhinal gyrus nTPM: 74.6
2613
Female, age 94, left hemisphere
83.4
1787
Male, age 76, left hemisphere
80.5
2686
Male, age 75, right hemisphere
77.5
2764
Male, age 80, right hemisphere
75.4
1938
Female, age 85, left hemisphere
70.3
2117
Female, age 91, right hemisphere
60.3
Hippocampus, CA1 nTPM: 84.8
2749
Male, age 80, left hemisphere
128.5
1873
Female, age 85, both hemispheres
93.7
2527
Male, age 74, both hemispheres
76.0
2045
Male, age 76, both hemispheres
69.0
2082
Female, age 91, right hemisphere
56.6
Hippocampus, CA2 nTPM: 82.0
1892
Male, age 76, both hemispheres
112.2
2437
Female, age 94, left hemisphere
98.1
1963
Male, age 80, left hemisphere
94.7
1940
Female, age 85, left hemisphere
66.5
2249
Male, age 74, both hemispheres
60.8
2113
Female, age 91, right hemisphere
59.8
Hippocampus, CA3 nTPM: 84.2
2137
Male, age 80, left hemisphere
111.6
2861
Female, age 67, both hemispheres
104.0
1867
Male, age 76, both hemispheres
77.0
2436
Male, age 74, both hemispheres
76.9
2620
Female, age 94, left hemisphere
72.5
1891
Female, age 85, both hemispheres
63.2
Parahippocampal cortex nTPM: 86.7
2245
Female, age 91, both hemispheres
125.9
2622
Female, age 67, right hemisphere
110.4
2532
Female, age 72, left hemisphere
97.5
2693
Female, age 94, both hemispheres
93.1
2250
Female, age 67, right hemisphere
79.0
1850
Male, age 80, both hemispheres
78.7
2018
Male, age 76, both hemispheres
72.8
1990
Female, age 91, right hemisphere
71.2
1933
Female, age 85, both hemispheres
70.3
2692
Male, age 74, both hemispheres
68.2
Perirhinal gyrus nTPM: 84.4
2521
Female, age 94, right hemisphere
92.5
1794
Male, age 80, right hemisphere
86.2
2848
Male, age 76, right hemisphere
83.4
1841
Female, age 85, right hemisphere
81.8
1847
Female, age 91, left hemisphere
78.2
Subiculum nTPM: 75.4
2438
Female, age 94, left hemisphere
114.0
1901
Male, age 80, both hemispheres
80.3
2042
Male, age 76, both hemispheres
68.8
2619
Male, age 74, both hemispheres
68.8
1977
Female, age 85, both hemispheres
67.8
2729
Female, age 91, right hemisphere
53.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 12.8
Samples: 197
Max nTPM: 34.7
Min nTPM: 4.1
Std nTPM: 5.5
Median nTPM: 11.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
34.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
30.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
30.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
29.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
29.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
25.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
24.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
23.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
23.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
23.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
23.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
22.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
22.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
22.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
22.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
21.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
21.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
21.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
21.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
21.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
20.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
20.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
20.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
20.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
19.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
19.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
18.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
18.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
18.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
18.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
18.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
18.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
18.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
18.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
18.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
18.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
17.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
17.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
17.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
17.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
17.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
17.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
17.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
17.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
16.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
16.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
16.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
16.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
15.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
15.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
15.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
15.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
15.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
15.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
15.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
15.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
14.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
14.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
14.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
14.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
14.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
14.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
13.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
13.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
13.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
13.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
13.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
13.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
13.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
13.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
13.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
13.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
12.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
12.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
12.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
12.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
12.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
12.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
12.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
12.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
12.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
12.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
12.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
12.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
12.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
12.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
12.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
12.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
12.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
12.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
12.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
12.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
12.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
11.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
11.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
11.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
11.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
11.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
11.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
11.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
11.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
11.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
11.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
11.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
11.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
11.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
11.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
11.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
10.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
10.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
10.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
10.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
10.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
10.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
10.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
10.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
10.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
10.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
10.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
10.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
10.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
10.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
10.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
10.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
10.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
9.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
9.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
9.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
9.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
9.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
9.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
9.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
9.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
9.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
9.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
9.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
9.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
9.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
9.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
9.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
9.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
8.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
8.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
8.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
8.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
8.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
8.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
8.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
8.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
8.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
8.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
8.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
8.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
8.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
8.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
8.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
8.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
8.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
7.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
7.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
7.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
7.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
7.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
7.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
7.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
7.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
7.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
7.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
7.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
7.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
7.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
7.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
7.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
7.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
7.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
7.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
7.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
6.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
6.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
6.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
6.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
6.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
6.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
6.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
6.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
6.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
6.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
6.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
6.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
6.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
6.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
6.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
5.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
5.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
5.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
4.1
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
130.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 123.6
Samples: 4
Max nTPM: 143.5
Min nTPM: 112.5
Sample A
Male
113.4
Sample B
Male
124.8
Sample C
Female
112.5
Sample D
Female
143.5
Hippocampal formation nTPM: 130.3
Samples: 4
Max nTPM: 159.2
Min nTPM: 105.7
Sample A
Male
105.7
Sample B
Male
146.9
Sample C
Female
159.2
Sample D
Female
109.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.