MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:22.0 nTPM
GTEx:14.9 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:64.2 nTPM
Mouse:23.9 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.6
1833 Male, age 53, unknown 13.3
2828 Female, age 72, unknown 13.2
2586 Male, age 75, left hemisphere 12.8
2411 Female, age 72, unknown 12.6
2019 Male, age 18, unknown 12.3
1830 Male, age 51, unknown 11.9
1870 Female, age 42, unknown 11.3
2219 Male, age 76, both hemispheres 9.6
2666 Male, age 74, left hemisphere 9.6
1827 Male, age 72, unknown 9.5
Dorsal raphe nucleus
nTPM: 22.0
2047 Male, age 72, unknown 28.4
2016 Female, age 72, unknown 24.3
2298 Female, age 72, unknown 23.0
1828 Male, age 53, unknown 18.4
2750 Male, age 76, both hemispheres 16.0
Inferior colliculus
nTPM: 13.0
1890 Male, age 53, unknown 15.0
2097 Female, age 72, unknown 13.7
2849 Male, age 72, unknown 11.8
1848 Female, age 42, unknown 11.6
Median raphe nucleus
nTPM: 20.4
2220 Male, age 76, midline 20.4
Periaquaductal grey, anterior
nTPM: 10.3
1795 Male, age 51, unknown 11.9
2502 Female, age 75, unknown 11.5
1947 Male, age 18, unknown 7.6
Periaquaductal grey, dorsal
nTPM: 14.0
2850 Male, age 76, both hemispheres 16.3
1840 Male, age 53, unknown 15.2
2464 Female, age 72, unknown 12.4
1831 Male, age 72, unknown 12.1
Periaquaductal grey, lateral
nTPM: 15.9
2272 Male, age 74, both hemispheres 19.8
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 13.8
Pretectal area
nTPM: 10.4
2273 Male, age 74, both hemispheres 17.1
2825 Male, age 18, unknown 15.7
2224 Female, age 72, unknown 15.6
2667 Female, age 75, unknown 11.3
2407 Male, age 75, both hemispheres 9.2
1817 Female, age 42, unknown 8.8
1944 Female, age 72, unknown 8.5
2316 Male, age 76, right hemisphere 8.1
1815 Male, age 53, unknown 7.7
2007 Male, age 72, unknown 7.2
1816 Male, age 51, unknown 5.3
Red nucleus
nTPM: 11.3
1821 Female, age 72, unknown 15.2
2503 Female, age 72, unknown 12.6
1954 Female, age 42, unknown 12.3
2227 Male, age 72, unknown 11.9
2725 Female, age 75, unknown 11.8
2769 Male, age 72, unknown 11.7
2823 Male, age 76, right hemisphere 11.3
1865 Male, age 51, unknown 10.8
1904 Male, age 53, unknown 10.3
2785 Male, age 18, unknown 9.7
2584 Male, age 75, left hemisphere 9.3
2588 Male, age 74, left hemisphere 9.0
Substantia nigra
nTPM: 19.0
1916 Female, age 42, unknown 32.2
2699 Male, age 18, unknown 27.3
1851 Male, age 51, unknown 26.3
2241 Male, age 72, unknown 22.6
1941 Male, age 53, unknown 18.9
2409 Female, age 72, unknown 17.4
2665 Male, age 74, both hemispheres 12.4
2583 Male, age 75, right hemisphere 11.9
2590 Female, age 75, unknown 10.7
1889 Female, age 72, unknown 10.5
Superior colliculus
nTPM: 9.5
2587 Male, age 74, left hemisphere 12.6
2668 Female, age 75, unknown 11.4
1796 Male, age 53, unknown 10.7
2664 Male, age 75, both hemispheres 10.7
1995 Male, age 72, unknown 10.1
1839 Male, age 51, unknown 9.9
2087 Female, age 72, unknown 8.3
1895 Male, age 76, right hemisphere 8.2
1913 Female, age 42, unknown 7.1
2261 Male, age 18, unknown 5.8
Ventral tegmental area
nTPM: 19.1
1915 Female, age 42, unknown 26.5
2410 Female, age 72, unknown 20.9
1942 Male, age 51, unknown 17.9
2218 Male, age 76, both hemispheres 17.4
2021 Male, age 53, unknown 16.9
2223 Female, age 72, unknown 14.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 183

Max nTPM: 74.6
Min nTPM: 4.3
Std nTPM: 7.9
Median nTPM: 13.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 74.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 50.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 48.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 41.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 33.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 32.3
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 32.2
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 29.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 26.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.8
FF:10158-103A5 76 years, female 15.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.3
Samples: 4

Max nTPM: 95.6
Min nTPM: 39.3
Sample A Female 95.6
Sample B Female 57.7
Sample C Male 64.4
Sample D Male 39.3
Midbrain
nTPM: 56.7
Samples: 4

Max nTPM: 67.7
Min nTPM: 39.9
Sample A Female 67.7
Sample B Female 60.1
Sample C Male 39.9
Sample D Male 59.0
Periaqueductal gray
nTPM: 55.6
Samples: 3

Max nTPM: 68.2
Min nTPM: 48.5
Sample B Female 50.1
Sample C Male 68.2
Sample D Male 48.5
Superior colliculi
nTPM: 61.1
Samples: 4

Max nTPM: 88.9
Min nTPM: 38.5
Sample A Female 88.9
Sample B Female 60.1
Sample C Male 38.5
Sample D Male 57.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 27.5
Min nTPM: 21.6
Sample A Male 27.5
Sample B Male 23.3
Sample C Female 21.6
Sample D Female 23.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69095979 Antisense, RP_050324_02_G04, Mouse strain C57BL/6J (56 days, male) 0.3

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