MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.9 nTPM
HPA Brain:201.1 nTPM
GTEx:87.9 nTPM
FANTOM5:267.5 Scaled Tags Per Million
Pig:103.4 nTPM
Mouse:61.3 nTPM
Allen mouse:5.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 201.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 156.3
2411 Female, age 72, unknown 218.3
1830 Male, age 51, unknown 201.8
1870 Female, age 42, unknown 198.4
2019 Male, age 18, unknown 169.8
1833 Male, age 53, unknown 156.3
2828 Female, age 72, unknown 151.1
2586 Male, age 75, left hemisphere 138.1
1827 Male, age 72, unknown 131.4
2666 Male, age 74, left hemisphere 102.3
2219 Male, age 76, both hemispheres 95.7
Dorsal raphe nucleus
nTPM: 145.5
2750 Male, age 76, both hemispheres 256.2
2047 Male, age 72, unknown 137.8
1828 Male, age 53, unknown 122.6
2298 Female, age 72, unknown 120.9
2016 Female, age 72, unknown 90.3
Inferior colliculus
nTPM: 97.3
1848 Female, age 42, unknown 124.8
1890 Male, age 53, unknown 101.2
2849 Male, age 72, unknown 92.0
2097 Female, age 72, unknown 71.2
Median raphe nucleus
nTPM: 201.1
2220 Male, age 76, midline 201.1
Periaquaductal grey, anterior
nTPM: 164.0
2502 Female, age 75, unknown 293.0
1947 Male, age 18, unknown 109.4
1795 Male, age 51, unknown 89.7
Periaquaductal grey, dorsal
nTPM: 88.6
2850 Male, age 76, both hemispheres 102.4
2464 Female, age 72, unknown 100.0
1831 Male, age 72, unknown 81.7
1840 Male, age 53, unknown 70.3
Periaquaductal grey, lateral
nTPM: 111.5
2272 Male, age 74, both hemispheres 117.1
2053 Male, age 18, unknown 116.8
2140 Male, age 76, both hemispheres 100.8
Pretectal area
nTPM: 122.4
2667 Female, age 75, unknown 148.4
2007 Male, age 72, unknown 138.7
2825 Male, age 18, unknown 138.2
1815 Male, age 53, unknown 134.6
1817 Female, age 42, unknown 131.6
1816 Male, age 51, unknown 128.3
2273 Male, age 74, both hemispheres 123.1
2407 Male, age 75, both hemispheres 116.3
1944 Female, age 72, unknown 102.4
2316 Male, age 76, right hemisphere 101.6
2224 Female, age 72, unknown 83.8
Red nucleus
nTPM: 193.3
1865 Male, age 51, unknown 252.8
2588 Male, age 74, left hemisphere 244.3
1821 Female, age 72, unknown 213.0
2725 Female, age 75, unknown 203.1
2769 Male, age 72, unknown 201.4
2227 Male, age 72, unknown 197.6
2785 Male, age 18, unknown 177.4
1904 Male, age 53, unknown 177.3
1954 Female, age 42, unknown 174.9
2584 Male, age 75, left hemisphere 164.8
2823 Male, age 76, right hemisphere 158.8
2503 Female, age 72, unknown 153.7
Substantia nigra
nTPM: 108.9
1941 Male, age 53, unknown 171.8
1889 Female, age 72, unknown 146.8
1916 Female, age 42, unknown 145.7
1851 Male, age 51, unknown 120.8
2583 Male, age 75, right hemisphere 117.2
2241 Male, age 72, unknown 114.3
2699 Male, age 18, unknown 84.4
2665 Male, age 74, both hemispheres 73.5
2409 Female, age 72, unknown 69.3
2590 Female, age 75, unknown 45.7
Superior colliculus
nTPM: 129.9
2587 Male, age 74, left hemisphere 182.9
2261 Male, age 18, unknown 160.0
1913 Female, age 42, unknown 146.9
1839 Male, age 51, unknown 127.8
2087 Female, age 72, unknown 122.8
1895 Male, age 76, right hemisphere 115.4
1995 Male, age 72, unknown 115.1
2664 Male, age 75, both hemispheres 114.9
1796 Male, age 53, unknown 108.4
2668 Female, age 75, unknown 105.1
Ventral tegmental area
nTPM: 166.9
2223 Female, age 72, unknown 329.5
2410 Female, age 72, unknown 177.1
2218 Male, age 76, both hemispheres 150.3
2021 Male, age 53, unknown 131.0
1942 Male, age 51, unknown 109.3
1915 Female, age 42, unknown 104.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 87.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.9
Samples: 183

Max nTPM: 711.6
Min nTPM: 10.3
Std nTPM: 72.1
Median nTPM: 71.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 711.6
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 308.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 270.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 257.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 251.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 227.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 217.8
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 214.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 209.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 207.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 192.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 267.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 267.5
FF:10158-103A5 76 years, female 267.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 103.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 103.4
Samples: 4

Max nTPM: 147.1
Min nTPM: 56.0
Sample A Female 147.1
Sample B Female 72.5
Sample C Male 137.8
Sample D Male 56.0
Midbrain
nTPM: 95.0
Samples: 4

Max nTPM: 175.0
Min nTPM: 48.2
Sample A Female 175.0
Sample B Female 76.7
Sample C Male 48.2
Sample D Male 80.1
Periaqueductal gray
nTPM: 83.4
Samples: 3

Max nTPM: 109.8
Min nTPM: 69.1
Sample B Female 71.2
Sample C Male 109.8
Sample D Male 69.1
Superior colliculi
nTPM: 64.9
Samples: 4

Max nTPM: 89.9
Min nTPM: 43.3
Sample A Female 89.9
Sample B Female 48.2
Sample C Male 43.3
Sample D Male 78.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 67.3
Min nTPM: 57.7
Sample A Male 57.7
Sample B Male 59.1
Sample C Female 61.2
Sample D Female 67.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
71016721 Antisense, RP_050808_02_A09, Mouse strain C57BL/6J (56 days, male) 6.7
671229 Antisense, RP_040914_01_H04, Mouse strain C57BL/6J (56 days, male) 3.4

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