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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:477.1 nTPM
HPA Brain:277.4 nTPM
GTEx:477.1 nTPM
FANTOM5:302.9 Scaled Tags Per Million
Pig:188.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 204.6
2816 Male, age 47, midline 258.8
1981 Female, age 72, midline 233.9
2194 Female, age 79, both hemispheres 186.8
2048 Male, age 55, midline 177.9
2565 Male, age 75, midline 165.5
Cervical spinal cord, dorsal horn
nTPM: 277.4
2296 Male, age 66, both hemispheres 749.4
2173 Female, age 72, unknown 338.9
2069 Male, age 47, both hemispheres 246.5
1877 Male, age 55, unknown 145.1
2721 Male, age 90, both hemispheres 102.4
2297 Male, age 75, both hemispheres 81.9
Cervical spinal cord, ventral horn
nTPM: 254.6
2098 Female, age 72, unknown 383.5
2480 Male, age 75, both hemispheres 284.2
2820 Female, age 79, both hemispheres 239.7
2068 Male, age 55, unknown 238.7
2809 Male, age 90, both hemispheres 192.4
2295 Male, age 66, both hemispheres 188.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

477.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 477.1
Samples: 204

Max nTPM: 1458.3
Min nTPM: 91.9
Std nTPM: 233.9
Median nTPM: 464.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1458.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1289.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1162.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1080.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1068.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 975.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 972.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 968.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 920.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 912.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 902.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 891.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 886.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 852.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 845.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 838.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 815.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 800.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 791.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 785.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 778.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 768.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 766.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 743.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 742.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 737.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 734.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 729.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 724.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 713.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 709.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 708.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 704.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 699.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 697.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 695.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 686.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 677.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 672.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 663.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 660.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 658.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 652.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 649.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 626.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 606.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 597.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 595.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 593.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 591.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 580.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 580.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 577.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 574.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 574.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 572.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 570.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 570.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 568.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 568.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 566.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 555.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 553.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 551.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 548.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 547.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 545.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 544.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 537.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 537.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 535.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 535.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 531.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 531.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 529.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 527.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 526.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 524.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 516.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 515.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 509.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 502.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 502.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 500.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 494.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 494.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 493.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 487.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 487.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 485.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 485.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 483.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 482.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 482.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 478.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 478.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 476.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 476.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 468.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 467.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 467.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 465.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 463.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 461.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 447.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 443.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 440.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 439.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 439.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 438.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 435.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 433.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 431.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 426.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 426.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 425.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 422.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 418.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 414.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 409.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 406.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 403.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 395.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 395.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 393.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 393.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 390.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 389.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 382.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 382.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 367.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 363.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 363.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 362.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 360.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 358.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 355.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 355.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 354.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 350.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 349.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 341.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 339.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 335.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 330.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 330.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 326.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 326.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 317.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 310.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 308.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 307.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 306.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 298.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 293.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 287.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 281.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 281.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 280.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 279.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 273.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 273.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 272.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 269.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 269.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 260.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 258.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 254.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 250.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 246.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 242.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 241.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 241.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 240.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 238.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 238.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 236.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 234.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 233.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 224.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 216.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 214.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 211.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 210.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 197.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 196.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 192.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 182.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 182.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 178.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 172.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 160.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 158.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 156.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 149.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 138.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 122.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 117.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 116.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 115.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 113.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 105.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 92.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 91.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

302.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 302.9
FF:10181-103D1 60 years, female 356.3
FF:10159-103A6 76 years, female 249.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 171.3
Samples: 4

Max nTPM: 190.2
Min nTPM: 146.8
Sample A Female 190.2
Sample B Female 146.8
Sample C Male 164.4
Sample D Male 183.6
Ventral spinal cord
nTPM: 188.8
Samples: 4

Max nTPM: 218.7
Min nTPM: 153.3
Sample A Female 208.9
Sample B Female 153.3
Sample C Male 174.3
Sample D Male 218.7

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