MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.3 nTPM
HPA Brain:78.1 nTPM
GTEx:53.3 nTPM
FANTOM5:214.0 Scaled Tags Per Million
Pig:16.4 nTPM
Mouse:93.8 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.2
1827 Male, age 72, unknown 86.9
2219 Male, age 76, both hemispheres 84.6
2411 Female, age 72, unknown 82.2
1833 Male, age 53, unknown 76.9
1830 Male, age 51, unknown 72.1
2019 Male, age 18, unknown 56.3
2828 Female, age 72, unknown 56.1
1870 Female, age 42, unknown 51.4
2666 Male, age 74, left hemisphere 50.2
2586 Male, age 75, left hemisphere 35.2
Dorsal raphe nucleus
nTPM: 58.7
2047 Male, age 72, unknown 74.1
2750 Male, age 76, both hemispheres 62.6
1828 Male, age 53, unknown 60.8
2016 Female, age 72, unknown 50.0
2298 Female, age 72, unknown 46.1
Inferior colliculus
nTPM: 66.6
2849 Male, age 72, unknown 93.4
1848 Female, age 42, unknown 73.7
2097 Female, age 72, unknown 52.6
1890 Male, age 53, unknown 46.6
Median raphe nucleus
nTPM: 74.0
2220 Male, age 76, midline 74.0
Periaquaductal grey, anterior
nTPM: 62.8
1947 Male, age 18, unknown 87.6
2502 Female, age 75, unknown 52.5
1795 Male, age 51, unknown 48.4
Periaquaductal grey, dorsal
nTPM: 61.7
2850 Male, age 76, both hemispheres 75.7
2464 Female, age 72, unknown 63.0
1840 Male, age 53, unknown 59.8
1831 Male, age 72, unknown 48.5
Periaquaductal grey, lateral
nTPM: 57.7
2053 Male, age 18, unknown 65.4
2272 Male, age 74, both hemispheres 60.6
2140 Male, age 76, both hemispheres 47.0
Pretectal area
nTPM: 64.2
1944 Female, age 72, unknown 98.8
2407 Male, age 75, both hemispheres 88.4
1815 Male, age 53, unknown 78.3
2224 Female, age 72, unknown 67.3
1817 Female, age 42, unknown 67.2
2667 Female, age 75, unknown 62.1
1816 Male, age 51, unknown 57.9
2825 Male, age 18, unknown 56.3
2007 Male, age 72, unknown 50.7
2273 Male, age 74, both hemispheres 49.4
2316 Male, age 76, right hemisphere 29.6
Red nucleus
nTPM: 54.3
2584 Male, age 75, left hemisphere 77.7
1821 Female, age 72, unknown 75.4
1954 Female, age 42, unknown 66.6
2725 Female, age 75, unknown 64.9
1865 Male, age 51, unknown 53.3
2227 Male, age 72, unknown 50.1
2769 Male, age 72, unknown 49.5
1904 Male, age 53, unknown 48.4
2823 Male, age 76, right hemisphere 43.3
2785 Male, age 18, unknown 42.7
2588 Male, age 74, left hemisphere 41.7
2503 Female, age 72, unknown 38.4
Substantia nigra
nTPM: 78.1
2409 Female, age 72, unknown 137.1
1941 Male, age 53, unknown 108.5
1916 Female, age 42, unknown 82.4
1889 Female, age 72, unknown 73.5
2241 Male, age 72, unknown 73.0
1851 Male, age 51, unknown 70.0
2699 Male, age 18, unknown 68.3
2590 Female, age 75, unknown 62.9
2583 Male, age 75, right hemisphere 55.2
2665 Male, age 74, both hemispheres 49.9
Superior colliculus
nTPM: 57.8
2587 Male, age 74, left hemisphere 83.4
1839 Male, age 51, unknown 69.6
1913 Female, age 42, unknown 65.3
2668 Female, age 75, unknown 62.6
2261 Male, age 18, unknown 56.3
1895 Male, age 76, right hemisphere 54.8
2664 Male, age 75, both hemispheres 52.8
2087 Female, age 72, unknown 48.0
1796 Male, age 53, unknown 46.4
1995 Male, age 72, unknown 38.5
Ventral tegmental area
nTPM: 68.8
2410 Female, age 72, unknown 105.3
2223 Female, age 72, unknown 69.6
1942 Male, age 51, unknown 66.8
2218 Male, age 76, both hemispheres 61.0
1915 Female, age 42, unknown 57.6
2021 Male, age 53, unknown 52.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.3
Samples: 183

Max nTPM: 198.0
Min nTPM: 20.9
Std nTPM: 27.5
Median nTPM: 47.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 198.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 166.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 145.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 142.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 142.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 120.4
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 114.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 112.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 111.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 110.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 106.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 214.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 214.0
FF:10158-103A5 76 years, female 214.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 19.2
Min nTPM: 13.6
Sample A Female 19.2
Sample B Female 13.6
Sample C Male 18.2
Sample D Male 14.4
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 16.2
Min nTPM: 14.6
Sample A Female 15.7
Sample B Female 14.8
Sample C Male 14.6
Sample D Male 16.2
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 15.5
Min nTPM: 14.1
Sample B Female 14.1
Sample C Male 15.5
Sample D Male 15.0
Superior colliculi
nTPM: 15.4
Samples: 4

Max nTPM: 17.3
Min nTPM: 11.6
Sample A Female 16.8
Sample B Female 11.6
Sample C Male 17.3
Sample D Male 16.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 93.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.8
Samples: 4

Max nTPM: 96.1
Min nTPM: 92.1
Sample A Male 92.8
Sample B Male 96.1
Sample C Female 92.1
Sample D Female 94.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
75144703 Antisense, RP_060220_02_B02, Mouse strain C57BL/6J (56 days, male) 1.6
68203482 Antisense, RP_041208_01_C02, Mouse strain C57BL/6J (56 days, male) 0.1

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