MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:32.6 nTPM
GTEx:13.0 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:54.8 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.3
1827 Male, age 72, unknown 32.6
2586 Male, age 75, left hemisphere 32.2
2666 Male, age 74, left hemisphere 31.4
2411 Female, age 72, unknown 30.7
1833 Male, age 53, unknown 28.7
1870 Female, age 42, unknown 28.7
2019 Male, age 18, unknown 28.5
2219 Male, age 76, both hemispheres 28.2
1830 Male, age 51, unknown 27.3
2828 Female, age 72, unknown 24.4
Dorsal raphe nucleus
nTPM: 24.8
2298 Female, age 72, unknown 27.0
1828 Male, age 53, unknown 25.8
2016 Female, age 72, unknown 24.0
2750 Male, age 76, both hemispheres 23.7
2047 Male, age 72, unknown 23.6
Inferior colliculus
nTPM: 32.6
2097 Female, age 72, unknown 33.5
1848 Female, age 42, unknown 33.2
2849 Male, age 72, unknown 32.9
1890 Male, age 53, unknown 30.8
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 31.5
2502 Female, age 75, unknown 33.9
1947 Male, age 18, unknown 31.7
1795 Male, age 51, unknown 28.9
Periaquaductal grey, dorsal
nTPM: 27.4
1840 Male, age 53, unknown 34.5
2464 Female, age 72, unknown 28.3
1831 Male, age 72, unknown 23.5
2850 Male, age 76, both hemispheres 23.4
Periaquaductal grey, lateral
nTPM: 24.5
2053 Male, age 18, unknown 26.4
2140 Male, age 76, both hemispheres 24.4
2272 Male, age 74, both hemispheres 22.6
Pretectal area
nTPM: 29.1
2007 Male, age 72, unknown 34.2
1944 Female, age 72, unknown 34.0
1816 Male, age 51, unknown 33.8
1817 Female, age 42, unknown 31.5
1815 Male, age 53, unknown 29.2
2224 Female, age 72, unknown 28.2
2825 Male, age 18, unknown 27.1
2407 Male, age 75, both hemispheres 26.4
2667 Female, age 75, unknown 25.6
2316 Male, age 76, right hemisphere 25.3
2273 Male, age 74, both hemispheres 24.6
Red nucleus
nTPM: 27.7
2584 Male, age 75, left hemisphere 34.1
1821 Female, age 72, unknown 32.8
2725 Female, age 75, unknown 28.9
2588 Male, age 74, left hemisphere 28.5
2785 Male, age 18, unknown 28.5
2769 Male, age 72, unknown 27.5
2503 Female, age 72, unknown 26.6
1954 Female, age 42, unknown 26.4
2227 Male, age 72, unknown 26.4
1865 Male, age 51, unknown 25.2
1904 Male, age 53, unknown 24.1
2823 Male, age 76, right hemisphere 23.5
Substantia nigra
nTPM: 32.0
2241 Male, age 72, unknown 38.8
1916 Female, age 42, unknown 37.1
1851 Male, age 51, unknown 34.3
2409 Female, age 72, unknown 33.7
1889 Female, age 72, unknown 32.9
1941 Male, age 53, unknown 31.0
2665 Male, age 74, both hemispheres 29.9
2590 Female, age 75, unknown 28.3
2583 Male, age 75, right hemisphere 27.5
2699 Male, age 18, unknown 26.5
Superior colliculus
nTPM: 28.4
1895 Male, age 76, right hemisphere 33.2
2261 Male, age 18, unknown 32.6
1839 Male, age 51, unknown 31.6
2668 Female, age 75, unknown 31.5
2087 Female, age 72, unknown 28.9
1796 Male, age 53, unknown 28.5
2664 Male, age 75, both hemispheres 27.0
2587 Male, age 74, left hemisphere 26.8
1913 Female, age 42, unknown 21.7
1995 Male, age 72, unknown 21.7
Ventral tegmental area
nTPM: 28.5
2410 Female, age 72, unknown 34.6
1915 Female, age 42, unknown 30.8
2218 Male, age 76, both hemispheres 27.2
2223 Female, age 72, unknown 26.6
2021 Male, age 53, unknown 26.3
1942 Male, age 51, unknown 25.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 25.7
Min nTPM: 6.6
Std nTPM: 3.6
Median nTPM: 12.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 25.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 24.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 22.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 21.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 20.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 20.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 20.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 20.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.1
FF:10158-103A5 76 years, female 14.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 31.3
Min nTPM: 20.2
Sample A Female 31.3
Sample B Female 23.2
Sample C Male 29.8
Sample D Male 20.2
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 40.2
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 28.6
Sample C Male 40.2
Sample D Male 37.2
Periaqueductal gray
nTPM: 29.9
Samples: 3

Max nTPM: 33.3
Min nTPM: 27.1
Sample B Female 29.4
Sample C Male 33.3
Sample D Male 27.1
Superior colliculi
nTPM: 36.0
Samples: 4

Max nTPM: 41.8
Min nTPM: 27.2
Sample A Female 41.8
Sample B Female 27.2
Sample C Male 38.1
Sample D Male 36.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 54.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.8
Samples: 4

Max nTPM: 56.4
Min nTPM: 51.4
Sample A Male 51.4
Sample B Male 56.4
Sample C Female 56.4
Sample D Female 54.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68158082 Antisense, RP_041116_02_H02, Mouse strain C57BL/6J (56 days, male) 2.3

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