A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
5.4
nTPM
Schmiedel:
97.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
NK-cell nTPM: 1.0
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.0
P10809_1013
0.8
P10809_1033
0.0
P10809_1052
0.8
P10809_1071
1.8
P10809_1093
0.0
P10809_1103
2.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.4
Monaco sample
nTPM
NK-cell nTPM: 5.4
Samples: 4
Max nTPM: 8.9
Min nTPM: 3.4
RHH5316_R3683
3.4
RHH5224_R3596
4.5
RHH5253_R3625
8.9
RHH5282_R3654
4.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
97.1
Schmiedel sample id
TPM
NK-cell TPM: 97.1
Samples: 90
Max TPM: 137.2
Min TPM: 58.1
NK_1
137.2
NK_2
135.4
NK_3
134.3
NK_4
132.3
NK_5
132.0
NK_6
130.1
NK_7
122.1
NK_8
122.1
NK_9
119.2
NK_10
119.0
NK_11
116.6
NK_12
116.5
NK_13
114.3
NK_14
112.8
NK_15
112.2
NK_16
111.9
NK_17
111.8
NK_18
109.5
NK_19
108.7
NK_20
107.8
NK_21
106.3
NK_22
103.7
NK_23
103.6
NK_24
103.5
NK_25
103.2
NK_26
103.2
NK_27
102.1
NK_28
101.4
NK_29
101.3
NK_30
100.9
NK_31
100.8
NK_32
100.6
NK_33
100.5
NK_34
100.4
NK_35
100.1
NK_36
99.9
NK_37
99.6
NK_38
98.8
NK_39
98.1
NK_40
96.8
NK_41
96.3
NK_42
95.5
NK_43
95.5
NK_44
95.4
NK_45
94.4
NK_46
94.4
NK_47
94.1
NK_48
93.9
NK_49
93.5
NK_50
93.4
NK_51
93.0
NK_52
93.0
NK_53
92.9
NK_54
92.2
NK_55
91.5
NK_56
91.2
NK_57
90.6
NK_58
90.5
NK_59
90.4
NK_60
90.3
NK_61
90.1
NK_62
89.9
NK_63
88.9
NK_64
88.2
NK_65
88.0
NK_66
87.9
NK_67
86.9
NK_68
86.7
NK_69
86.7
NK_70
86.1
NK_71
85.0
NK_72
84.4
NK_73
84.1
NK_74
84.0
NK_75
83.9
NK_76
83.5
NK_77
83.4
NK_78
82.3
NK_79
82.1
NK_80
79.9
NK_81
79.3
NK_82
78.8
NK_83
78.7
NK_84
77.8
NK_85
76.7
NK_86
76.5
NK_87
73.1
NK_88
71.0
NK_89
61.2
NK_90
58.1
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