A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.0
nTPM
Monaco:
45.7
nTPM
Schmiedel:
187.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.0
HPA sample
nTPM
Classical monocyte nTPM: 2.0
Samples: 6
Max nTPM: 2.5
Min nTPM: 1.3
P10809_1003
1.3
P10809_1020
1.9
P10809_1039
2.5
P10809_1058
2.0
P10809_1080
1.9
P10809_1107
2.5
Intermediate monocyte nTPM: 1.9
Samples: 6
Max nTPM: 3.4
Min nTPM: 1.0
P10809_1004
1.5
P10809_1023
1.4
P10809_1042
2.1
P10809_1061
3.4
P10809_1081
2.0
P10809_1108
1.0
Non-classical monocyte nTPM: 1.7
Samples: 5
Max nTPM: 2.9
Min nTPM: 0.4
P10809_1005
1.2
P10809_1053
1.8
P10809_1072
0.4
P10809_1082
2.3
P10809_1109
2.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.7
Monaco sample
nTPM
Classical monocyte nTPM: 45.7
Samples: 4
Max nTPM: 106.3
Min nTPM: 13.3
RHH5313_R3680
14.1
RHH5221_R3593
106.3
RHH5250_R3622
48.9
RHH5279_R3651
13.3
Intermediate monocyte nTPM: 40.0
Samples: 4
Max nTPM: 80.8
Min nTPM: 5.1
RHH5314_R3681
9.5
RHH5222_R3594
64.7
RHH5251_R3623
80.8
RHH5280_R3652
5.1
Non-classical monocyte nTPM: 14.1
Samples: 4
Max nTPM: 19.7
Min nTPM: 8.5
RHH5315_R3682
10.2
RHH5223_R3595
17.8
RHH5252_R3624
19.7
RHH5281_R3653
8.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
187.6
Schmiedel sample id
TPM
Classical monocyte TPM: 187.6
Samples: 91
Max TPM: 389.6
Min TPM: 116.7
MONOCYTES_1
389.6
MONOCYTES_2
284.9
MONOCYTES_3
271.7
MONOCYTES_4
267.2
MONOCYTES_5
254.1
MONOCYTES_6
248.8
MONOCYTES_7
240.1
MONOCYTES_8
235.7
MONOCYTES_9
234.5
MONOCYTES_10
233.5
MONOCYTES_11
230.8
MONOCYTES_12
229.2
MONOCYTES_13
228.0
MONOCYTES_14
227.0
MONOCYTES_15
226.6
MONOCYTES_16
224.7
MONOCYTES_17
222.0
MONOCYTES_18
220.5
MONOCYTES_19
217.9
MONOCYTES_20
216.7
MONOCYTES_21
210.7
MONOCYTES_22
209.3
MONOCYTES_23
206.9
MONOCYTES_24
203.0
MONOCYTES_25
202.6
MONOCYTES_26
200.9
MONOCYTES_27
200.1
MONOCYTES_28
197.9
MONOCYTES_29
197.2
MONOCYTES_30
195.2
MONOCYTES_31
194.5
MONOCYTES_32
193.9
MONOCYTES_33
192.5
MONOCYTES_34
191.6
MONOCYTES_35
190.5
MONOCYTES_36
188.5
MONOCYTES_37
188.3
MONOCYTES_38
187.7
MONOCYTES_39
187.3
MONOCYTES_40
186.8
MONOCYTES_41
186.7
MONOCYTES_42
184.6
MONOCYTES_43
180.1
MONOCYTES_44
178.8
MONOCYTES_45
178.5
MONOCYTES_46
177.6
MONOCYTES_47
176.4
MONOCYTES_48
174.8
MONOCYTES_49
174.5
MONOCYTES_50
174.4
MONOCYTES_51
174.4
MONOCYTES_52
173.5
MONOCYTES_53
173.5
MONOCYTES_54
173.4
MONOCYTES_55
173.1
MONOCYTES_56
172.2
MONOCYTES_57
171.9
MONOCYTES_58
171.7
MONOCYTES_59
169.9
MONOCYTES_60
168.9
MONOCYTES_61
168.5
MONOCYTES_62
168.5
MONOCYTES_63
168.5
MONOCYTES_64
166.9
MONOCYTES_65
166.1
MONOCYTES_66
163.8
MONOCYTES_67
163.2
MONOCYTES_68
162.8
MONOCYTES_69
162.5
MONOCYTES_70
161.9
MONOCYTES_71
161.4
MONOCYTES_72
159.2
MONOCYTES_73
159.1
MONOCYTES_74
157.7
MONOCYTES_75
156.9
MONOCYTES_76
156.4
MONOCYTES_77
156.3
MONOCYTES_78
156.2
MONOCYTES_79
155.3
MONOCYTES_80
152.1
MONOCYTES_81
151.3
MONOCYTES_82
149.9
MONOCYTES_83
143.5
MONOCYTES_84
143.4
MONOCYTES_85
142.7
MONOCYTES_86
142.0
MONOCYTES_87
138.5
MONOCYTES_88
130.9
MONOCYTES_89
128.6
MONOCYTES_90
123.5
MONOCYTES_91
116.7
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Non-classical monocyte TPM: 116.8
Samples: 90
Max TPM: 156.6
Min TPM: 78.0
M2_1
156.6
M2_2
154.6
M2_3
150.1
M2_4
146.5
M2_5
145.3
M2_6
141.7
M2_7
141.5
M2_8
137.3
M2_9
136.3
M2_10
135.1
M2_11
135.0
M2_12
134.2
M2_13
132.3
M2_14
130.1
M2_15
130.1
M2_16
129.4
M2_17
129.0
M2_18
129.0
M2_19
128.8
M2_20
128.8
M2_21
128.5
M2_22
128.4
M2_23
127.6
M2_24
125.8
M2_25
125.4
M2_26
125.2
M2_27
125.1
M2_28
124.3
M2_29
123.6
M2_30
123.3
M2_31
121.9
M2_32
121.5
M2_33
121.3
M2_34
121.3
M2_35
120.1
M2_36
119.5
M2_37
118.6
M2_38
118.4
M2_39
118.0
M2_40
117.8
M2_41
117.1
M2_42
116.9
M2_43
116.8
M2_44
116.6
M2_45
116.0
M2_46
115.7
M2_47
115.4
M2_48
114.5
M2_49
113.8
M2_50
113.6
M2_51
112.7
M2_52
111.8
M2_53
111.8
M2_54
111.3
M2_55
111.3
M2_56
110.7
M2_57
110.7
M2_58
109.8
M2_59
109.7
M2_60
109.7
M2_61
109.6
M2_62
108.7
M2_63
108.3
M2_64
108.1
M2_65
107.7
M2_66
107.6
M2_67
107.0
M2_68
106.9
M2_69
106.5
M2_70
106.0
M2_71
105.4
M2_72
104.7
M2_73
104.3
M2_74
103.9
M2_75
103.8
M2_76
103.3
M2_77
103.2
M2_78
99.7
M2_79
98.8
M2_80
98.3
M2_81
98.2
M2_82
98.0
M2_83
97.9
M2_84
97.7
M2_85
96.2
M2_86
95.4
M2_87
93.1
M2_88
92.2
M2_89
87.5
M2_90
78.0
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