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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • CELL LINE

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  • EVOLUTION

  • FBXO2
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:217.7 nTPM
GTEx:262.7 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Macaque:34.4 nTPM
Pig:97.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 217.7
1916 Female, age 42, unknown 386.0
1851 Male, age 51, unknown 294.8
1941 Male, age 53, unknown 288.1
2699 Male, age 18, unknown 253.2
1889 Female, age 72, unknown 198.4
2583 Male, age 75, right hemisphere 172.1
2241 Male, age 72, unknown 159.4
2409 Female, age 72, unknown 158.5
2665 Male, age 74, both hemispheres 155.3
2590 Female, age 75, unknown 111.1

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

262.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 262.7
Samples: 183

Max nTPM: 540.2
Min nTPM: 69.6
Std nTPM: 102.0
Median nTPM: 242.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 540.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 506.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 495.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 490.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 481.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 478.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 461.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 447.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 444.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 444.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 443.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 443.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 433.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 433.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 432.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 424.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 422.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 421.1
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 411.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 402.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 398.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 393.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 389.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 389.7
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 388.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 386.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 374.5
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 374.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 370.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 366.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 364.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 364.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 364.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 360.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 360.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 357.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 351.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 346.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 345.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 344.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 339.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 338.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 334.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 334.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 331.6
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 330.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 328.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 328.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 325.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 325.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 322.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 322.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 320.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 319.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 317.0
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 316.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 314.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 310.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 310.0
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 308.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 306.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 305.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 304.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 302.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 302.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 302.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 302.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 300.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 299.9
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 298.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 296.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 296.5
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 295.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 291.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 291.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 280.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 276.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 274.6
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 268.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 265.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 264.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 264.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 264.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 262.6
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 255.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 254.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 253.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 251.6
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 245.2
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 244.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 244.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 242.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 240.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 239.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 239.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 238.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 235.6
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 234.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 232.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 230.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 230.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 229.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 229.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 229.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 229.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 228.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 228.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 226.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 225.2
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 220.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 218.4
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 217.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 217.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 215.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 215.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 214.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 211.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 211.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 208.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 207.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 207.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 207.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 206.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 205.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 205.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 205.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 204.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 198.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 193.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 192.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 192.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 191.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 191.0
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 190.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 190.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 189.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 188.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 186.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 185.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 183.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 180.7
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 180.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 179.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 179.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 177.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 176.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 175.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 172.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 171.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 171.3
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 171.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 168.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 164.5
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 162.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 162.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 162.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 160.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 159.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 153.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 152.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 151.6
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 146.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 144.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 142.9
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 140.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 139.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 137.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 135.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 126.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 117.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 115.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 112.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 109.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 108.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 104.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 103.7
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 100.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 96.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 92.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 92.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 78.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 77.7
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 69.6
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.4
FF:10158-103A5 76 years, female 125.4

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 1

Max nTPM: 34.4
Min nTPM: 34.4
Sample A 34.4

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 97.8
Samples: 3

Max nTPM: 127.3
Min nTPM: 52.4
Sample A Female 127.3
Sample B Female 52.4
Sample C Male 113.7

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