HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.2 nTPM
HPA Brain:35.2 nTPM
GTEx:38.2 nTPM
FANTOM5:38.0 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:35.9 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 35.2
Sample id Sample description nTPM
Hippocampus
nTPM: 20.0
1898 Male, age 80, left hemisphere 30.3
2621 Female, age 67, right hemisphere 21.7
1855 Male, age 76, left hemisphere 21.5
2529 Female, age 94, left hemisphere 16.7
1911 Female, age 85, right hemisphere 15.7
2148 Female, age 91, left hemisphere 14.4
Dentate gyrus
nTPM: 21.4
2010 Male, age 76, both hemispheres 45.5
1927 Female, age 91, both hemispheres 29.5
2531 Female, age 67, both hemispheres 14.7
2246 Female, age 85, both hemispheres 14.3
2530 Female, age 94, left hemisphere 12.5
2528 Male, age 74, both hemispheres 12.1
Entorhinal gyrus
nTPM: 13.8
1938 Female, age 85, left hemisphere 17.3
2764 Male, age 80, right hemisphere 16.3
1787 Male, age 76, left hemisphere 13.9
2686 Male, age 75, right hemisphere 12.9
2117 Female, age 91, right hemisphere 11.8
2613 Female, age 94, left hemisphere 10.4
Hippocampus, CA1
nTPM: 35.2
2749 Male, age 80, left hemisphere 70.4
2045 Male, age 76, both hemispheres 58.8
1873 Female, age 85, both hemispheres 19.1
2082 Female, age 91, right hemisphere 15.5
2527 Male, age 74, both hemispheres 12.0
Hippocampus, CA2
nTPM: 23.4
1892 Male, age 76, both hemispheres 56.4
1963 Male, age 80, left hemisphere 26.7
2249 Male, age 74, both hemispheres 17.0
1940 Female, age 85, left hemisphere 14.1
2113 Female, age 91, right hemisphere 14.1
2437 Female, age 94, left hemisphere 12.4
Hippocampus, CA3
nTPM: 32.9
1867 Male, age 76, both hemispheres 78.2
2137 Male, age 80, left hemisphere 52.4
2436 Male, age 74, both hemispheres 22.1
2620 Female, age 94, left hemisphere 19.1
1891 Female, age 85, both hemispheres 13.7
2861 Female, age 67, both hemispheres 11.8
Parahippocampal cortex
nTPM: 16.2
2018 Male, age 76, both hemispheres 26.4
2245 Female, age 91, both hemispheres 21.4
1850 Male, age 80, both hemispheres 18.8
1990 Female, age 91, right hemisphere 18.3
2250 Female, age 67, right hemisphere 16.4
1933 Female, age 85, both hemispheres 15.6
2532 Female, age 72, left hemisphere 13.1
2693 Female, age 94, both hemispheres 12.8
2622 Female, age 67, right hemisphere 10.6
2692 Male, age 74, both hemispheres 8.3
Perirhinal gyrus
nTPM: 21.0
2848 Male, age 76, right hemisphere 23.6
1847 Female, age 91, left hemisphere 23.0
2521 Female, age 94, right hemisphere 20.4
1794 Male, age 80, right hemisphere 19.0
1841 Female, age 85, right hemisphere 18.8
Subiculum
nTPM: 22.9
2042 Male, age 76, both hemispheres 47.4
1901 Male, age 80, both hemispheres 30.7
2438 Female, age 94, left hemisphere 19.9
1977 Female, age 85, both hemispheres 17.2
2729 Female, age 91, right hemisphere 11.5
2619 Male, age 74, both hemispheres 10.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 38.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.2
Samples: 255

Max nTPM: 238.0
Min nTPM: 4.9
Std nTPM: 33.9
Median nTPM: 28.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 238.0
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 233.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 229.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 211.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 153.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 138.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 123.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 122.4
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 120.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 120.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 119.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.0
FF:10169-103B7 60 years, female 43.6
FF:10153-102I9 76 years, female 32.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 41.1
Pig sample Sample description nTPM
Subiculum
nTPM: 30.5
Samples: 4

Max nTPM: 35.6
Min nTPM: 23.1
Sample A Female 35.0
Sample B Female 23.1
Sample C Male 28.3
Sample D Male 35.6
Dorsal hippocampus
nTPM: 30.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 24.0
Sample A Female 27.9
Sample B Female 33.2
Sample C Male 24.0
Sample D Male 37.2
Entorhinal cortex
nTPM: 41.1
Samples: 4

Max nTPM: 55.5
Min nTPM: 31.3
Sample A Female 55.5
Sample B Female 39.8
Sample C Male 37.7
Sample D Male 31.3
Ventral hippocampus
nTPM: 27.9
Samples: 4

Max nTPM: 39.0
Min nTPM: 19.3
Sample A Female 24.8
Sample B Female 28.5
Sample C Male 39.0
Sample D Male 19.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 35.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 36.0
Samples: 4

Max nTPM: 38.7
Min nTPM: 34.4
Sample A Male 36.2
Sample B Male 38.7
Sample C Female 34.4
Sample D Female 34.5
Hippocampal formation
nTPM: 26.2
Samples: 4

Max nTPM: 33.5
Min nTPM: 22.1
Sample A Male 33.5
Sample B Male 22.1
Sample C Female 22.9
Sample D Female 26.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
71724666 Antisense, RP_050921_01_D08, Mouse strain C57BL/6J (56 days, male) 0.3
73635771 Antisense, RP_050921_01_D08, Mouse strain C57BL/6J (56 days, male) 0.1

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