MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA Brain:29.9 nTPM
GTEx:31.2 nTPM
FANTOM5:182.9 Scaled Tags Per Million
Mouse:36.5 nTPM
Allen mouse:12.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.1
2666 Male, age 74, left hemisphere 29.1
2219 Male, age 76, both hemispheres 29.0
2828 Female, age 72, unknown 26.7
1830 Male, age 51, unknown 25.3
1870 Female, age 42, unknown 23.5
1827 Male, age 72, unknown 23.4
2019 Male, age 18, unknown 21.4
2586 Male, age 75, left hemisphere 21.4
1833 Male, age 53, unknown 21.3
2411 Female, age 72, unknown 19.7
Dorsal raphe nucleus
nTPM: 20.3
2750 Male, age 76, both hemispheres 24.8
2016 Female, age 72, unknown 22.7
1828 Male, age 53, unknown 20.1
2298 Female, age 72, unknown 17.1
2047 Male, age 72, unknown 17.0
Inferior colliculus
nTPM: 21.5
2849 Male, age 72, unknown 31.9
1848 Female, age 42, unknown 20.3
1890 Male, age 53, unknown 18.7
2097 Female, age 72, unknown 15.2
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 19.2
1795 Male, age 51, unknown 20.3
2502 Female, age 75, unknown 19.2
1947 Male, age 18, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 23.2
2850 Male, age 76, both hemispheres 36.8
1831 Male, age 72, unknown 21.2
1840 Male, age 53, unknown 19.7
2464 Female, age 72, unknown 14.9
Periaquaductal grey, lateral
nTPM: 22.0
2140 Male, age 76, both hemispheres 31.3
2053 Male, age 18, unknown 19.8
2272 Male, age 74, both hemispheres 15.0
Pretectal area
nTPM: 22.0
2316 Male, age 76, right hemisphere 27.1
2407 Male, age 75, both hemispheres 25.4
2007 Male, age 72, unknown 24.2
1815 Male, age 53, unknown 24.1
1816 Male, age 51, unknown 23.7
1817 Female, age 42, unknown 23.6
2825 Male, age 18, unknown 22.2
2667 Female, age 75, unknown 20.4
2224 Female, age 72, unknown 20.2
1944 Female, age 72, unknown 17.1
2273 Male, age 74, both hemispheres 14.3
Red nucleus
nTPM: 23.3
2503 Female, age 72, unknown 34.6
2725 Female, age 75, unknown 29.8
2227 Male, age 72, unknown 24.6
1821 Female, age 72, unknown 22.9
1865 Male, age 51, unknown 22.2
2584 Male, age 75, left hemisphere 22.0
2588 Male, age 74, left hemisphere 22.0
1904 Male, age 53, unknown 21.9
2823 Male, age 76, right hemisphere 21.6
1954 Female, age 42, unknown 19.6
2769 Male, age 72, unknown 19.4
2785 Male, age 18, unknown 19.4
Substantia nigra
nTPM: 18.6
2699 Male, age 18, unknown 26.4
2665 Male, age 74, both hemispheres 23.4
1941 Male, age 53, unknown 19.6
1851 Male, age 51, unknown 18.6
2590 Female, age 75, unknown 17.7
1889 Female, age 72, unknown 17.4
1916 Female, age 42, unknown 17.4
2583 Male, age 75, right hemisphere 17.2
2409 Female, age 72, unknown 15.8
2241 Male, age 72, unknown 12.7
Superior colliculus
nTPM: 21.5
1913 Female, age 42, unknown 27.1
1995 Male, age 72, unknown 24.5
1796 Male, age 53, unknown 24.3
2664 Male, age 75, both hemispheres 21.7
2261 Male, age 18, unknown 21.6
1839 Male, age 51, unknown 21.5
1895 Male, age 76, right hemisphere 19.1
2587 Male, age 74, left hemisphere 18.9
2087 Female, age 72, unknown 18.4
2668 Female, age 75, unknown 18.1
Ventral tegmental area
nTPM: 22.4
2218 Male, age 76, both hemispheres 30.1
2223 Female, age 72, unknown 25.8
2021 Male, age 53, unknown 23.6
1915 Female, age 42, unknown 20.1
1942 Male, age 51, unknown 18.1
2410 Female, age 72, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.2
Samples: 183

Max nTPM: 52.4
Min nTPM: 19.6
Std nTPM: 6.4
Median nTPM: 30.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 49.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 48.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 48.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 44.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 43.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 42.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 42.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 42.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 182.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.9
FF:10158-103A5 76 years, female 182.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.5
Samples: 4

Max nTPM: 37.8
Min nTPM: 35.6
Sample A Male 36.3
Sample B Male 37.8
Sample C Female 36.2
Sample D Female 35.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
69202818 Antisense, RP_050324_04_D10, Mouse strain C57BL/6J (56 days, male) 12.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo