MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.3 nTPM
HPA Brain:63.2 nTPM
GTEx:82.3 nTPM
FANTOM5:79.7 Scaled Tags Per Million
Pig:130.8 nTPM
Mouse:214.7 nTPM
Allen mouse:15.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.7
2019 Male, age 18, unknown 74.4
2411 Female, age 72, unknown 60.2
1827 Male, age 72, unknown 54.9
1870 Female, age 42, unknown 51.8
1833 Male, age 53, unknown 50.4
2219 Male, age 76, both hemispheres 47.5
2828 Female, age 72, unknown 47.5
1830 Male, age 51, unknown 47.1
2666 Male, age 74, left hemisphere 43.2
2586 Male, age 75, left hemisphere 39.5
Dorsal raphe nucleus
nTPM: 57.9
2298 Female, age 72, unknown 67.5
1828 Male, age 53, unknown 62.0
2750 Male, age 76, both hemispheres 55.7
2047 Male, age 72, unknown 55.4
2016 Female, age 72, unknown 48.9
Inferior colliculus
nTPM: 55.6
2097 Female, age 72, unknown 64.9
1890 Male, age 53, unknown 56.2
1848 Female, age 42, unknown 55.0
2849 Male, age 72, unknown 46.2
Median raphe nucleus
nTPM: 50.0
2220 Male, age 76, midline 50.0
Periaquaductal grey, anterior
nTPM: 51.2
1947 Male, age 18, unknown 52.9
1795 Male, age 51, unknown 51.3
2502 Female, age 75, unknown 49.4
Periaquaductal grey, dorsal
nTPM: 45.5
2850 Male, age 76, both hemispheres 51.5
2464 Female, age 72, unknown 47.2
1840 Male, age 53, unknown 43.2
1831 Male, age 72, unknown 40.1
Periaquaductal grey, lateral
nTPM: 52.2
2272 Male, age 74, both hemispheres 65.5
2140 Male, age 76, both hemispheres 47.4
2053 Male, age 18, unknown 43.6
Pretectal area
nTPM: 63.2
2007 Male, age 72, unknown 81.1
1817 Female, age 42, unknown 79.2
1816 Male, age 51, unknown 72.3
2667 Female, age 75, unknown 71.0
1944 Female, age 72, unknown 66.7
1815 Male, age 53, unknown 64.2
2273 Male, age 74, both hemispheres 62.7
2224 Female, age 72, unknown 59.4
2316 Male, age 76, right hemisphere 53.7
2825 Male, age 18, unknown 44.7
2407 Male, age 75, both hemispheres 39.7
Red nucleus
nTPM: 55.8
1821 Female, age 72, unknown 72.9
2785 Male, age 18, unknown 67.9
2503 Female, age 72, unknown 62.4
2823 Male, age 76, right hemisphere 59.6
1865 Male, age 51, unknown 56.7
1954 Female, age 42, unknown 56.3
2725 Female, age 75, unknown 55.5
2769 Male, age 72, unknown 53.9
1904 Male, age 53, unknown 52.9
2227 Male, age 72, unknown 52.9
2588 Male, age 74, left hemisphere 39.9
2584 Male, age 75, left hemisphere 38.6
Substantia nigra
nTPM: 56.5
1889 Female, age 72, unknown 69.6
1916 Female, age 42, unknown 64.6
2241 Male, age 72, unknown 61.8
1941 Male, age 53, unknown 61.3
1851 Male, age 51, unknown 60.5
2409 Female, age 72, unknown 56.6
2665 Male, age 74, both hemispheres 51.3
2590 Female, age 75, unknown 51.2
2699 Male, age 18, unknown 48.1
2583 Male, age 75, right hemisphere 40.5
Superior colliculus
nTPM: 52.3
2087 Female, age 72, unknown 61.6
2587 Male, age 74, left hemisphere 58.8
1895 Male, age 76, right hemisphere 56.1
1796 Male, age 53, unknown 53.7
1913 Female, age 42, unknown 53.0
2261 Male, age 18, unknown 52.6
1839 Male, age 51, unknown 51.0
2668 Female, age 75, unknown 50.6
1995 Male, age 72, unknown 49.2
2664 Male, age 75, both hemispheres 36.6
Ventral tegmental area
nTPM: 52.2
2410 Female, age 72, unknown 67.3
2218 Male, age 76, both hemispheres 55.4
1915 Female, age 42, unknown 52.8
2223 Female, age 72, unknown 50.4
2021 Male, age 53, unknown 44.0
1942 Male, age 51, unknown 43.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 82.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.3
Samples: 183

Max nTPM: 135.3
Min nTPM: 43.9
Std nTPM: 15.5
Median nTPM: 80.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 135.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 121.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 121.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 117.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 116.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 114.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 113.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 112.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 111.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 111.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 110.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.7
FF:10158-103A5 76 years, female 79.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 130.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 109.1
Samples: 4

Max nTPM: 145.2
Min nTPM: 88.6
Sample A Female 145.2
Sample B Female 88.6
Sample C Male 103.8
Sample D Male 98.7
Midbrain
nTPM: 122.4
Samples: 4

Max nTPM: 141.4
Min nTPM: 105.2
Sample A Female 141.4
Sample B Female 105.2
Sample C Male 127.8
Sample D Male 115.2
Periaqueductal gray
nTPM: 94.1
Samples: 3

Max nTPM: 98.9
Min nTPM: 86.8
Sample B Female 98.9
Sample C Male 96.7
Sample D Male 86.8
Superior colliculi
nTPM: 130.9
Samples: 4

Max nTPM: 161.0
Min nTPM: 100.7
Sample A Female 161.0
Sample B Female 100.7
Sample C Male 143.1
Sample D Male 118.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 214.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 214.7
Samples: 4

Max nTPM: 233.3
Min nTPM: 198.7
Sample A Male 233.3
Sample B Male 212.4
Sample C Female 198.7
Sample D Female 214.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.3
686214 Antisense, RP_040916_01_B12, Mouse strain C57BL/6J (56 days, male) 15.8
74658140 Antisense, RP_060220_02_C09, Mouse strain C57BL/6J (56 days, male) 14.7

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