HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.7 nTPM
HPA Brain:218.9 nTPM
GTEx:26.7 nTPM
FANTOM5:77.1 Scaled Tags Per Million
Pig:341.8 nTPM
Mouse:303.8 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 218.9
Sample id Sample description nTPM
Hippocampus
nTPM: 34.7
1898 Male, age 80, left hemisphere 70.2
2621 Female, age 67, right hemisphere 39.1
1855 Male, age 76, left hemisphere 31.0
2148 Female, age 91, left hemisphere 23.7
1911 Female, age 85, right hemisphere 23.1
2529 Female, age 94, left hemisphere 20.8
Dentate gyrus
nTPM: 31.1
1927 Female, age 91, both hemispheres 61.6
2010 Male, age 76, both hemispheres 41.9
2246 Female, age 85, both hemispheres 27.9
2531 Female, age 67, both hemispheres 27.9
2528 Male, age 74, both hemispheres 15.1
2530 Female, age 94, left hemisphere 12.1
Entorhinal gyrus
nTPM: 117.4
2764 Male, age 80, right hemisphere 180.6
2613 Female, age 94, left hemisphere 165.4
1938 Female, age 85, left hemisphere 133.0
1787 Male, age 76, left hemisphere 101.9
2686 Male, age 75, right hemisphere 77.4
2117 Female, age 91, right hemisphere 46.2
Hippocampus, CA1
nTPM: 54.8
2045 Male, age 76, both hemispheres 128.6
2749 Male, age 80, left hemisphere 82.1
2527 Male, age 74, both hemispheres 25.2
1873 Female, age 85, both hemispheres 21.2
2082 Female, age 91, right hemisphere 16.9
Hippocampus, CA2
nTPM: 47.9
1892 Male, age 76, both hemispheres 141.4
2437 Female, age 94, left hemisphere 52.8
2113 Female, age 91, right hemisphere 29.8
1963 Male, age 80, left hemisphere 28.1
2249 Male, age 74, both hemispheres 17.9
1940 Female, age 85, left hemisphere 17.3
Hippocampus, CA3
nTPM: 66.2
1867 Male, age 76, both hemispheres 190.4
2137 Male, age 80, left hemisphere 59.1
2620 Female, age 94, left hemisphere 54.8
1891 Female, age 85, both hemispheres 48.3
2861 Female, age 67, both hemispheres 25.3
2436 Male, age 74, both hemispheres 19.1
Parahippocampal cortex
nTPM: 138.7
1850 Male, age 80, both hemispheres 225.3
2532 Female, age 72, left hemisphere 196.0
1990 Female, age 91, right hemisphere 178.5
1933 Female, age 85, both hemispheres 156.3
2245 Female, age 91, both hemispheres 154.6
2693 Female, age 94, both hemispheres 133.3
2622 Female, age 67, right hemisphere 108.6
2250 Female, age 67, right hemisphere 106.5
2018 Male, age 76, both hemispheres 71.1
2692 Male, age 74, both hemispheres 56.5
Perirhinal gyrus
nTPM: 218.9
1847 Female, age 91, left hemisphere 315.9
1841 Female, age 85, right hemisphere 243.5
1794 Male, age 80, right hemisphere 212.9
2521 Female, age 94, right hemisphere 194.0
2848 Male, age 76, right hemisphere 127.9
Subiculum
nTPM: 71.8
1977 Female, age 85, both hemispheres 112.9
2438 Female, age 94, left hemisphere 95.9
1901 Male, age 80, both hemispheres 88.8
2042 Male, age 76, both hemispheres 61.2
2619 Male, age 74, both hemispheres 56.8
2729 Female, age 91, right hemisphere 15.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 26.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.7
Samples: 255

Max nTPM: 237.5
Min nTPM: 0.6
Std nTPM: 35.1
Median nTPM: 15.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 237.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 188.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 167.3
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 163.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 162.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 162.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 142.6
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 136.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 135.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 124.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 119.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 77.1
FF:10169-103B7 60 years, female 87.2
FF:10153-102I9 76 years, female 67.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 341.8
Pig sample Sample description nTPM
Subiculum
nTPM: 232.5
Samples: 4

Max nTPM: 372.8
Min nTPM: 151.2
Sample A Female 372.8
Sample B Female 188.5
Sample C Male 151.2
Sample D Male 217.6
Dorsal hippocampus
nTPM: 105.8
Samples: 4

Max nTPM: 156.0
Min nTPM: 38.6
Sample A Female 147.9
Sample B Female 80.8
Sample C Male 156.0
Sample D Male 38.6
Entorhinal cortex
nTPM: 341.9
Samples: 4

Max nTPM: 406.0
Min nTPM: 304.6
Sample A Female 349.1
Sample B Female 406.0
Sample C Male 304.6
Sample D Male 307.7
Ventral hippocampus
nTPM: 79.6
Samples: 4

Max nTPM: 101.0
Min nTPM: 65.9
Sample A Female 65.9
Sample B Female 74.8
Sample C Male 76.6
Sample D Male 101.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 303.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 303.8
Samples: 4

Max nTPM: 401.1
Min nTPM: 229.7
Sample A Male 309.9
Sample B Male 401.1
Sample C Female 229.7
Sample D Female 274.5
Hippocampal formation
nTPM: 149.0
Samples: 4

Max nTPM: 176.3
Min nTPM: 133.4
Sample A Male 176.3
Sample B Male 133.4
Sample C Female 141.9
Sample D Female 144.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.7
74511884 Antisense, RP_060117_02_C07, Mouse strain C57BL/6J (56 days, male) 11.3
79632282 Antisense, RP_071204_01_B12, Mouse strain C57BL/6J (56 days, male) 11.2
2532 Antisense, RP_040625_02_A06, Mouse strain C57BL/6J (56 days, male) 3.7
1569 Antisense, RP_040625_02_A06, Mouse strain C57BL/6J (56 days, male) 3.5

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