MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:141.2 nTPM
HPA Brain:249.0 nTPM
GTEx:141.2 nTPM
FANTOM5:283.9 Scaled Tags Per Million
Pig:34.8 nTPM
Mouse:28.3 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 249.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 161.3
1830 Male, age 51, unknown 204.7
1870 Female, age 42, unknown 201.6
2019 Male, age 18, unknown 197.6
2411 Female, age 72, unknown 184.8
1833 Male, age 53, unknown 183.5
2586 Male, age 75, left hemisphere 176.6
2828 Female, age 72, unknown 142.8
2666 Male, age 74, left hemisphere 135.2
1827 Male, age 72, unknown 95.5
2219 Male, age 76, both hemispheres 90.7
Dorsal raphe nucleus
nTPM: 128.6
2750 Male, age 76, both hemispheres 247.9
1828 Male, age 53, unknown 117.4
2047 Male, age 72, unknown 110.5
2016 Female, age 72, unknown 101.6
2298 Female, age 72, unknown 65.7
Inferior colliculus
nTPM: 98.7
1890 Male, age 53, unknown 121.2
1848 Female, age 42, unknown 106.6
2849 Male, age 72, unknown 89.4
2097 Female, age 72, unknown 77.3
Median raphe nucleus
nTPM: 152.5
2220 Male, age 76, midline 152.5
Periaquaductal grey, anterior
nTPM: 68.3
1947 Male, age 18, unknown 70.5
2502 Female, age 75, unknown 69.3
1795 Male, age 51, unknown 65.1
Periaquaductal grey, dorsal
nTPM: 58.5
2464 Female, age 72, unknown 88.6
1831 Male, age 72, unknown 75.3
2850 Male, age 76, both hemispheres 35.7
1840 Male, age 53, unknown 34.4
Periaquaductal grey, lateral
nTPM: 66.9
2272 Male, age 74, both hemispheres 92.5
2053 Male, age 18, unknown 76.9
2140 Male, age 76, both hemispheres 31.1
Pretectal area
nTPM: 82.4
2407 Male, age 75, both hemispheres 126.7
1815 Male, age 53, unknown 108.8
2316 Male, age 76, right hemisphere 107.4
2007 Male, age 72, unknown 101.7
1817 Female, age 42, unknown 94.3
2825 Male, age 18, unknown 91.1
2273 Male, age 74, both hemispheres 71.2
2224 Female, age 72, unknown 58.4
1944 Female, age 72, unknown 52.7
1816 Male, age 51, unknown 47.0
2667 Female, age 75, unknown 46.8
Red nucleus
nTPM: 249.0
1865 Male, age 51, unknown 290.7
2823 Male, age 76, right hemisphere 280.2
1821 Female, age 72, unknown 267.0
2769 Male, age 72, unknown 265.1
2227 Male, age 72, unknown 264.1
2584 Male, age 75, left hemisphere 256.7
1904 Male, age 53, unknown 256.2
2588 Male, age 74, left hemisphere 239.1
2785 Male, age 18, unknown 231.0
2725 Female, age 75, unknown 218.4
1954 Female, age 42, unknown 212.1
2503 Female, age 72, unknown 207.2
Substantia nigra
nTPM: 119.1
2583 Male, age 75, right hemisphere 180.0
2590 Female, age 75, unknown 164.7
1889 Female, age 72, unknown 127.8
1851 Male, age 51, unknown 127.3
1941 Male, age 53, unknown 123.7
2409 Female, age 72, unknown 117.3
2699 Male, age 18, unknown 101.9
1916 Female, age 42, unknown 90.5
2665 Male, age 74, both hemispheres 82.6
2241 Male, age 72, unknown 74.9
Superior colliculus
nTPM: 113.3
1913 Female, age 42, unknown 162.5
1995 Male, age 72, unknown 147.3
2587 Male, age 74, left hemisphere 142.8
2668 Female, age 75, unknown 138.8
1839 Male, age 51, unknown 122.4
1895 Male, age 76, right hemisphere 119.3
1796 Male, age 53, unknown 90.5
2664 Male, age 75, both hemispheres 81.3
2261 Male, age 18, unknown 66.7
2087 Female, age 72, unknown 61.8
Ventral tegmental area
nTPM: 158.4
2223 Female, age 72, unknown 314.8
2410 Female, age 72, unknown 166.1
2218 Male, age 76, both hemispheres 130.4
1942 Male, age 51, unknown 129.1
2021 Male, age 53, unknown 116.4
1915 Female, age 42, unknown 93.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 141.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.2
Samples: 183

Max nTPM: 693.9
Min nTPM: 18.2
Std nTPM: 96.3
Median nTPM: 116.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 693.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 650.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 566.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 372.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 351.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 345.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 333.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 330.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 327.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 317.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 306.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 283.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.9
FF:10158-103A5 76 years, female 283.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 40.1
Min nTPM: 21.4
Sample A Female 32.3
Sample B Female 21.4
Sample C Male 40.1
Sample D Male 37.4
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 67.4
Min nTPM: 16.3
Sample A Female 67.4
Sample B Female 26.2
Sample C Male 16.3
Sample D Male 29.2
Periaqueductal gray
nTPM: 19.8
Samples: 3

Max nTPM: 21.7
Min nTPM: 18.3
Sample B Female 21.7
Sample C Male 18.3
Sample D Male 19.4
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 31.5
Min nTPM: 13.7
Sample A Female 27.6
Sample B Female 13.7
Sample C Male 19.0
Sample D Male 31.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 29.5
Min nTPM: 26.9
Sample A Male 29.3
Sample B Male 26.9
Sample C Female 29.5
Sample D Female 27.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69782879 Antisense, RP_050505_03_H11, Mouse strain C57BL/6J (56 days, male) 1.5

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