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ATP6V0B
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  • ATP6V0B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:160.7 nTPM
HPA Brain:127.3 nTPM
GTEx:160.7 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:109.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 110.7
1981 Female, age 72, midline 140.0
2565 Male, age 75, midline 123.8
2194 Female, age 79, both hemispheres 120.9
2816 Male, age 47, midline 93.9
2048 Male, age 55, midline 75.0
Cervical spinal cord, dorsal horn
nTPM: 127.3
2069 Male, age 47, both hemispheres 167.6
2173 Female, age 72, unknown 150.5
2296 Male, age 66, both hemispheres 148.6
2297 Male, age 75, both hemispheres 119.5
1877 Male, age 55, unknown 104.1
2721 Male, age 90, both hemispheres 73.2
Cervical spinal cord, ventral horn
nTPM: 114.6
2480 Male, age 75, both hemispheres 134.3
2098 Female, age 72, unknown 127.9
2809 Male, age 90, both hemispheres 113.5
2068 Male, age 55, unknown 113.0
2295 Male, age 66, both hemispheres 109.7
2820 Female, age 79, both hemispheres 89.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 160.7
Samples: 204

Max nTPM: 325.0
Min nTPM: 84.9
Std nTPM: 37.0
Median nTPM: 156.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 325.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 290.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 269.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 250.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 236.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 234.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 234.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 231.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 231.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 230.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 223.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 222.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 218.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 217.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 217.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 215.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 215.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 213.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 211.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 206.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 204.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 203.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 203.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 202.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 202.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 200.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 199.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 199.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 198.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 197.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 197.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 195.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 192.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 192.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 192.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 192.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 190.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 189.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 189.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 188.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 188.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 187.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 187.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 187.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 185.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 184.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 183.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 183.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 182.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 182.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 182.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 181.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 181.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 181.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 180.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 180.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 179.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 179.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 178.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 178.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 177.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 177.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 176.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 176.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 175.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 175.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 174.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 174.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 174.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 174.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 173.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 173.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 173.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 171.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 169.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 169.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 168.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 168.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 168.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 168.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 167.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 167.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 167.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 165.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 164.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 164.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 164.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 163.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 162.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 162.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 162.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 160.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 160.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 159.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 159.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 159.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 158.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 158.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 157.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 156.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 156.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 155.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 154.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 154.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 154.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 154.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 154.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 153.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 153.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 153.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 153.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 152.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 151.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 151.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 151.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 150.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 149.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 149.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 149.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 148.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 148.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 148.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 148.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 147.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 146.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 145.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 145.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 145.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 144.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 143.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 143.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 142.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 142.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 142.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 141.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 141.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 141.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 141.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 141.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 140.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 139.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 139.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 138.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 138.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 138.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 137.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 137.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 136.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 135.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 135.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 135.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 134.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 134.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 134.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 132.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 132.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 131.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 131.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 131.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 129.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 129.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 129.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 126.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 126.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 126.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 126.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 125.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 125.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 125.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 124.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 124.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 123.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 122.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 122.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 122.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 121.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 119.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 119.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 118.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 117.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 116.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 115.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 114.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 114.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 112.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 112.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 111.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 111.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 110.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 109.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 106.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 105.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 105.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 104.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 104.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 101.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 99.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 99.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 92.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 84.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 43.7
FF:10181-103D1 60 years, female 46.9
FF:10159-103A6 76 years, female 40.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 91.8
Samples: 4

Max nTPM: 102.3
Min nTPM: 79.8
Sample A Female 93.8
Sample B Female 79.8
Sample C Male 102.3
Sample D Male 91.1
Ventral spinal cord
nTPM: 109.1
Samples: 4

Max nTPM: 115.8
Min nTPM: 103.8
Sample A Female 103.8
Sample B Female 115.8
Sample C Male 111.5
Sample D Male 105.2

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