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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:132.4 nTPM
HPA Brain:84.4 nTPM
GTEx:132.4 nTPM
FANTOM5:233.2 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:95.7 nTPM
Allen mouse:2.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.4
Sample id Sample description nTPM
Amygdala
nTPM: 84.4
1987 Female, age 91, left hemisphere 103.4
2514 Male, age 75, right hemisphere 92.5
2695 Female, age 67, right hemisphere 77.4
2814 Male, age 76, right hemisphere 74.7
2517 Female, age 94, left hemisphere 74.1
Basal amygdala
nTPM: 74.8
2609 Male, age 75, right hemisphere 104.5
2110 Male, age 80, left hemisphere 83.3
1955 Male, age 76, both hemispheres 81.9
2243 Female, age 91, right hemisphere 73.2
2685 Female, age 94, left hemisphere 69.3
2827 Female, age 67, right hemisphere 36.8
Central amygdala
nTPM: 74.6
2515 Male, age 75, right hemisphere 93.3
2826 Female, age 94, left hemisphere 74.3
1905 Male, age 76, both hemispheres 72.7
2701 Female, age 91, right hemisphere 66.5
2239 Male, age 80, left hemisphere 66.4
Corticomedial amygdala
nTPM: 72.0
2428 Male, age 75, right hemisphere 103.1
2240 Male, age 76, both hemispheres 80.7
2829 Male, age 80, left hemisphere 74.6
2242 Female, age 91, right hemisphere 73.4
2429 Female, age 94, left hemisphere 63.2
2535 Female, age 67, right hemisphere 36.8
Lateral amygdala
nTPM: 65.8
2516 Male, age 75, right hemisphere 93.1
2256 Male, age 80, left hemisphere 71.8
1883 Male, age 76, both hemispheres 66.2
2255 Female, age 91, right hemisphere 64.8
2534 Female, age 94, left hemisphere 63.5
2830 Female, age 67, right hemisphere 35.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.4
Samples: 181

Max nTPM: 337.2
Min nTPM: 33.8
Std nTPM: 48.0
Median nTPM: 124.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 337.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 269.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 262.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 249.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 239.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 236.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 228.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 220.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 220.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 218.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 217.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 215.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 215.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 214.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 213.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 211.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 209.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 206.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 198.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 197.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 187.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 186.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 185.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 184.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 184.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 181.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 181.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 175.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 175.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 174.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 174.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 173.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 172.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 171.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 170.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 170.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 167.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 165.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 163.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 163.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 163.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 162.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 162.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 162.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 160.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 158.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 158.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 157.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 157.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 156.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 156.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 153.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 150.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 149.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 149.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 148.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 148.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 148.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 147.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 147.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 146.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 145.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 145.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 144.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 144.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 143.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 142.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 142.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 140.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 140.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 140.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 135.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 134.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 133.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 133.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 132.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 132.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 130.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 130.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 129.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 129.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 128.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 126.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 126.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 126.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 126.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 125.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 125.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 124.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 124.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 122.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 121.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 121.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 121.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 121.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 121.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 120.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 120.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 120.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 119.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 119.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 119.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 119.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 118.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 118.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 116.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 116.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 116.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 115.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 114.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 114.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 112.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 112.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 111.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 111.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 111.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 111.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 111.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 109.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 106.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 105.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 105.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 105.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 105.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 105.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 105.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 103.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 103.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 102.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 101.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 99.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 98.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 98.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 97.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 97.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 96.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 95.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 93.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 93.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 93.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 92.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 90.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 90.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 90.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 89.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 86.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 86.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 84.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 84.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 83.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 81.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 81.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 80.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 77.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 76.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 76.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 76.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 75.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 75.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 75.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 71.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 71.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 70.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 69.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 69.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 69.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 65.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 64.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 60.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 59.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 55.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 52.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 33.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

233.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 233.2
FF:10151-102I7 76 years, female 233.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.6
Pig sample Sample description nTPM
Amygdala
nTPM: 38.6
Samples: 4

Max nTPM: 45.9
Min nTPM: 31.9
Sample A Female 45.9
Sample B Female 42.0
Sample C Male 31.9
Sample D Male 34.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 95.8
Samples: 4

Max nTPM: 112.6
Min nTPM: 79.7
Sample A Male 79.7
Sample B Male 86.1
Sample C Female 104.6
Sample D Female 112.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.1
686199 Antisense, RP_040916_01_A07, Mouse strain C57BL/6J (56 days, male) 2.1

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