MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:153.2 nTPM
HPA Brain:74.7 nTPM
GTEx:153.2 nTPM
FANTOM5:123.6 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:87.7 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.2
1870 Female, age 42, unknown 82.6
2586 Male, age 75, left hemisphere 79.3
2411 Female, age 72, unknown 77.1
1830 Male, age 51, unknown 68.7
2828 Female, age 72, unknown 63.1
1833 Male, age 53, unknown 60.9
2019 Male, age 18, unknown 60.1
1827 Male, age 72, unknown 53.4
2666 Male, age 74, left hemisphere 45.8
2219 Male, age 76, both hemispheres 40.6
Dorsal raphe nucleus
nTPM: 59.9
2750 Male, age 76, both hemispheres 88.0
2016 Female, age 72, unknown 58.5
2047 Male, age 72, unknown 55.2
2298 Female, age 72, unknown 50.8
1828 Male, age 53, unknown 46.9
Inferior colliculus
nTPM: 47.1
1890 Male, age 53, unknown 54.8
2097 Female, age 72, unknown 51.5
1848 Female, age 42, unknown 43.4
2849 Male, age 72, unknown 38.6
Median raphe nucleus
nTPM: 50.3
2220 Male, age 76, midline 50.3
Periaquaductal grey, anterior
nTPM: 55.3
1947 Male, age 18, unknown 64.3
2502 Female, age 75, unknown 53.8
1795 Male, age 51, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 38.0
2464 Female, age 72, unknown 43.7
2850 Male, age 76, both hemispheres 36.4
1831 Male, age 72, unknown 36.1
1840 Male, age 53, unknown 35.8
Periaquaductal grey, lateral
nTPM: 49.0
2272 Male, age 74, both hemispheres 50.1
2053 Male, age 18, unknown 49.9
2140 Male, age 76, both hemispheres 47.1
Pretectal area
nTPM: 49.8
2007 Male, age 72, unknown 57.3
2273 Male, age 74, both hemispheres 57.1
1815 Male, age 53, unknown 56.5
2316 Male, age 76, right hemisphere 53.2
2825 Male, age 18, unknown 51.7
2667 Female, age 75, unknown 49.5
2224 Female, age 72, unknown 49.2
2407 Male, age 75, both hemispheres 46.4
1817 Female, age 42, unknown 45.6
1944 Female, age 72, unknown 43.8
1816 Male, age 51, unknown 37.7
Red nucleus
nTPM: 74.7
1904 Male, age 53, unknown 92.9
2769 Male, age 72, unknown 90.9
1865 Male, age 51, unknown 88.7
2227 Male, age 72, unknown 86.7
2503 Female, age 72, unknown 80.6
1954 Female, age 42, unknown 73.4
2588 Male, age 74, left hemisphere 73.1
2785 Male, age 18, unknown 71.2
1821 Female, age 72, unknown 65.4
2584 Male, age 75, left hemisphere 59.5
2725 Female, age 75, unknown 59.4
2823 Male, age 76, right hemisphere 54.5
Substantia nigra
nTPM: 55.9
2590 Female, age 75, unknown 68.5
1851 Male, age 51, unknown 67.1
2583 Male, age 75, right hemisphere 64.6
1916 Female, age 42, unknown 64.1
2409 Female, age 72, unknown 61.6
1889 Female, age 72, unknown 52.9
2665 Male, age 74, both hemispheres 47.6
2699 Male, age 18, unknown 45.9
1941 Male, age 53, unknown 44.1
2241 Male, age 72, unknown 43.0
Superior colliculus
nTPM: 53.7
1913 Female, age 42, unknown 71.7
1995 Male, age 72, unknown 62.1
2587 Male, age 74, left hemisphere 59.1
2261 Male, age 18, unknown 54.2
1796 Male, age 53, unknown 54.1
2668 Female, age 75, unknown 54.0
2664 Male, age 75, both hemispheres 51.8
1895 Male, age 76, right hemisphere 48.3
1839 Male, age 51, unknown 46.7
2087 Female, age 72, unknown 35.6
Ventral tegmental area
nTPM: 62.2
1915 Female, age 42, unknown 70.4
2223 Female, age 72, unknown 66.2
2410 Female, age 72, unknown 65.9
1942 Male, age 51, unknown 64.3
2021 Male, age 53, unknown 59.2
2218 Male, age 76, both hemispheres 46.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 153.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 153.2
Samples: 183

Max nTPM: 521.8
Min nTPM: 49.1
Std nTPM: 69.8
Median nTPM: 134.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 521.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 501.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 430.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 349.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 321.8
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 304.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 297.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 281.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 275.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 252.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 251.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 123.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.6
FF:10158-103A5 76 years, female 123.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.7
Samples: 4

Max nTPM: 38.1
Min nTPM: 25.3
Sample A Female 36.9
Sample B Female 38.1
Sample C Male 25.3
Sample D Male 30.4
Midbrain
nTPM: 35.6
Samples: 4

Max nTPM: 67.6
Min nTPM: 18.9
Sample A Female 67.6
Sample B Female 30.1
Sample C Male 25.8
Sample D Male 18.9
Periaqueductal gray
nTPM: 23.5
Samples: 3

Max nTPM: 24.8
Min nTPM: 21.0
Sample B Female 24.6
Sample C Male 24.8
Sample D Male 21.0
Superior colliculi
nTPM: 34.4
Samples: 4

Max nTPM: 45.8
Min nTPM: 23.3
Sample A Female 40.7
Sample B Female 45.8
Sample C Male 27.7
Sample D Male 23.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 87.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.8
Samples: 4

Max nTPM: 92.8
Min nTPM: 84.7
Sample A Male 92.8
Sample B Male 84.7
Sample C Female 85.7
Sample D Female 87.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71763972 Antisense, RP_050921_02_H09, Mouse strain C57BL/6J (56 days, male) 0.4
74272919 Antisense, RP_050921_02_H09, Mouse strain C57BL/6J (56 days, male) 0.1

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