MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.4 nTPM
HPA Brain:27.3 nTPM
GTEx:31.4 nTPM
FANTOM5:46.6 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:13.0 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.3
1870 Female, age 42, unknown 26.7
2411 Female, age 72, unknown 25.1
1827 Male, age 72, unknown 23.9
1830 Male, age 51, unknown 22.6
2828 Female, age 72, unknown 22.6
1833 Male, age 53, unknown 21.6
2019 Male, age 18, unknown 21.5
2666 Male, age 74, left hemisphere 20.2
2219 Male, age 76, both hemispheres 19.4
2586 Male, age 75, left hemisphere 19.0
Dorsal raphe nucleus
nTPM: 26.3
2298 Female, age 72, unknown 33.0
2047 Male, age 72, unknown 26.5
1828 Male, age 53, unknown 25.2
2016 Female, age 72, unknown 24.7
2750 Male, age 76, both hemispheres 22.3
Inferior colliculus
nTPM: 23.1
2097 Female, age 72, unknown 24.3
1848 Female, age 42, unknown 24.1
2849 Male, age 72, unknown 23.5
1890 Male, age 53, unknown 20.6
Median raphe nucleus
nTPM: 21.1
2220 Male, age 76, midline 21.1
Periaquaductal grey, anterior
nTPM: 24.0
1795 Male, age 51, unknown 24.8
1947 Male, age 18, unknown 24.4
2502 Female, age 75, unknown 22.8
Periaquaductal grey, dorsal
nTPM: 24.7
1840 Male, age 53, unknown 26.8
2850 Male, age 76, both hemispheres 26.8
2464 Female, age 72, unknown 22.9
1831 Male, age 72, unknown 22.2
Periaquaductal grey, lateral
nTPM: 27.3
2272 Male, age 74, both hemispheres 29.0
2053 Male, age 18, unknown 26.7
2140 Male, age 76, both hemispheres 26.2
Pretectal area
nTPM: 25.1
2273 Male, age 74, both hemispheres 33.8
2667 Female, age 75, unknown 28.6
2224 Female, age 72, unknown 28.5
1944 Female, age 72, unknown 24.8
2825 Male, age 18, unknown 24.8
1817 Female, age 42, unknown 23.5
2316 Male, age 76, right hemisphere 23.4
2007 Male, age 72, unknown 23.1
1815 Male, age 53, unknown 22.9
1816 Male, age 51, unknown 22.4
2407 Male, age 75, both hemispheres 20.0
Red nucleus
nTPM: 21.8
1821 Female, age 72, unknown 25.2
1954 Female, age 42, unknown 23.3
2725 Female, age 75, unknown 23.3
2227 Male, age 72, unknown 22.8
1865 Male, age 51, unknown 22.7
1904 Male, age 53, unknown 22.5
2503 Female, age 72, unknown 22.0
2769 Male, age 72, unknown 21.7
2823 Male, age 76, right hemisphere 21.3
2785 Male, age 18, unknown 21.0
2588 Male, age 74, left hemisphere 18.1
2584 Male, age 75, left hemisphere 17.8
Substantia nigra
nTPM: 23.9
2409 Female, age 72, unknown 26.0
1941 Male, age 53, unknown 25.6
1851 Male, age 51, unknown 25.4
2241 Male, age 72, unknown 24.6
1916 Female, age 42, unknown 24.5
2699 Male, age 18, unknown 24.4
1889 Female, age 72, unknown 23.5
2665 Male, age 74, both hemispheres 22.7
2590 Female, age 75, unknown 22.1
2583 Male, age 75, right hemisphere 20.5
Superior colliculus
nTPM: 23.5
2587 Male, age 74, left hemisphere 27.1
1796 Male, age 53, unknown 25.2
1913 Female, age 42, unknown 24.7
2261 Male, age 18, unknown 24.7
1839 Male, age 51, unknown 23.7
1995 Male, age 72, unknown 23.0
2087 Female, age 72, unknown 22.6
1895 Male, age 76, right hemisphere 21.6
2668 Female, age 75, unknown 21.5
2664 Male, age 75, both hemispheres 20.7
Ventral tegmental area
nTPM: 24.4
2410 Female, age 72, unknown 27.3
1915 Female, age 42, unknown 24.9
2223 Female, age 72, unknown 24.7
2021 Male, age 53, unknown 24.1
1942 Male, age 51, unknown 22.7
2218 Male, age 76, both hemispheres 22.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.4
Samples: 183

Max nTPM: 76.3
Min nTPM: 20.1
Std nTPM: 7.7
Median nTPM: 29.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 76.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 62.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 53.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 53.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 53.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 52.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 49.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 46.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 45.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 42.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.6
FF:10158-103A5 76 years, female 46.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.1
Samples: 4

Max nTPM: 17.0
Min nTPM: 15.5
Sample A Female 15.5
Sample B Female 16.2
Sample C Male 15.5
Sample D Male 17.0
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 18.9
Min nTPM: 12.0
Sample A Female 18.9
Sample B Female 16.6
Sample C Male 12.0
Sample D Male 15.4
Periaqueductal gray
nTPM: 16.7
Samples: 3

Max nTPM: 17.0
Min nTPM: 16.1
Sample B Female 16.1
Sample C Male 17.0
Sample D Male 16.9
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 15.7
Min nTPM: 14.3
Sample A Female 14.5
Sample B Female 14.4
Sample C Male 14.3
Sample D Male 15.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.2
Sample A Male 14.1
Sample B Male 13.0
Sample C Female 12.2
Sample D Female 12.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70812768 Antisense, RP_050712_02_E10, Mouse strain C57BL/6J (56 days, male) 0.5
68191360 Antisense, RP_041129_01_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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