HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		166.178
RNA expressioni
Consensus:43.6 nTPM
HPA Brain:51.3 nTPM
GTEx:43.6 nTPM
FANTOM5:202.5 Scaled Tags Per Million
Pig:59.3 nTPM
Mouse:149.6 nTPM
Allen mouse:10.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030694Antibody HPA030695
Glial cells Not detectedLow
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA030694
Hippocampal formation mean intensity 166.178
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 146.123
Molecular layer of the dentate gyrus 120.768
Granular dentate gyrus 154.385
CA1 - oriens layer 80.666
CA1 - pyramidal layer 111.020
CA1 - radiatum layer 74.943
CA2 - oriens layer 86.988
CA2 - pyramidal layer 115.263
CA2 - radiatum layer 86.082
CA3 - oriens layer 87.533
CA3 - pyramidal layer 166.178
CA3 - radiatum layer 92.349
Stratum lucidum 74.263
Lacunosum moleculare 89.588
Subiculum 76.765

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 51.3
Sample id Sample description nTPM
Hippocampus
nTPM: 45.0
1898 Male, age 80, left hemisphere 61.3
2529 Female, age 94, left hemisphere 45.3
1855 Male, age 76, left hemisphere 44.2
2621 Female, age 67, right hemisphere 42.1
1911 Female, age 85, right hemisphere 38.8
2148 Female, age 91, left hemisphere 38.6
Dentate gyrus
nTPM: 42.3
1927 Female, age 91, both hemispheres 49.7
2010 Male, age 76, both hemispheres 46.0
2528 Male, age 74, both hemispheres 43.1
2246 Female, age 85, both hemispheres 41.7
2530 Female, age 94, left hemisphere 38.6
2531 Female, age 67, both hemispheres 34.4
Entorhinal gyrus
nTPM: 44.1
1938 Female, age 85, left hemisphere 52.3
1787 Male, age 76, left hemisphere 46.6
2764 Male, age 80, right hemisphere 45.9
2613 Female, age 94, left hemisphere 45.5
2117 Female, age 91, right hemisphere 45.3
2686 Male, age 75, right hemisphere 29.1
Hippocampus, CA1
nTPM: 46.6
2749 Male, age 80, left hemisphere 60.3
1873 Female, age 85, both hemispheres 53.4
2527 Male, age 74, both hemispheres 46.6
2045 Male, age 76, both hemispheres 41.9
2082 Female, age 91, right hemisphere 30.6
Hippocampus, CA2
nTPM: 43.2
1892 Male, age 76, both hemispheres 56.1
1963 Male, age 80, left hemisphere 50.5
2249 Male, age 74, both hemispheres 45.7
1940 Female, age 85, left hemisphere 37.7
2437 Female, age 94, left hemisphere 34.9
2113 Female, age 91, right hemisphere 34.2
Hippocampus, CA3
nTPM: 43.0
1867 Male, age 76, both hemispheres 48.1
2137 Male, age 80, left hemisphere 47.9
2436 Male, age 74, both hemispheres 46.9
1891 Female, age 85, both hemispheres 41.6
2620 Female, age 94, left hemisphere 41.2
2861 Female, age 67, both hemispheres 32.0
Parahippocampal cortex
nTPM: 41.7
1850 Male, age 80, both hemispheres 54.2
1990 Female, age 91, right hemisphere 48.3
1933 Female, age 85, both hemispheres 47.3
2250 Female, age 67, right hemisphere 40.6
2532 Female, age 72, left hemisphere 40.2
2693 Female, age 94, both hemispheres 39.3
2018 Male, age 76, both hemispheres 39.2
2245 Female, age 91, both hemispheres 38.3
2692 Male, age 74, both hemispheres 35.4
2622 Female, age 67, right hemisphere 33.8
Perirhinal gyrus
nTPM: 51.3
1847 Female, age 91, left hemisphere 59.9
1841 Female, age 85, right hemisphere 52.0
1794 Male, age 80, right hemisphere 51.3
2848 Male, age 76, right hemisphere 46.8
2521 Female, age 94, right hemisphere 46.5
Subiculum
nTPM: 43.0
1977 Female, age 85, both hemispheres 48.0
2438 Female, age 94, left hemisphere 47.9
1901 Male, age 80, both hemispheres 47.5
2619 Male, age 74, both hemispheres 40.3
2729 Female, age 91, right hemisphere 39.4
2042 Male, age 76, both hemispheres 35.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 43.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.6
Samples: 255

Max nTPM: 93.5
Min nTPM: 20.1
Std nTPM: 12.1
Median nTPM: 41.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 93.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 88.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 83.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 79.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 79.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 75.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 72.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 70.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 69.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 69.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 65.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 202.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 202.5
FF:10169-103B7 60 years, female 266.9
FF:10153-102I9 76 years, female 138.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 59.3
Pig sample Sample description nTPM
Subiculum
nTPM: 55.2
Samples: 4

Max nTPM: 60.5
Min nTPM: 52.1
Sample A Female 60.5
Sample B Female 52.1
Sample C Male 53.4
Sample D Male 54.8
Dorsal hippocampus
nTPM: 50.6
Samples: 4

Max nTPM: 53.9
Min nTPM: 47.3
Sample A Female 52.7
Sample B Female 53.9
Sample C Male 48.4
Sample D Male 47.3
Entorhinal cortex
nTPM: 59.3
Samples: 4

Max nTPM: 68.0
Min nTPM: 52.7
Sample A Female 59.8
Sample B Female 68.0
Sample C Male 56.8
Sample D Male 52.7
Ventral hippocampus
nTPM: 48.9
Samples: 4

Max nTPM: 52.3
Min nTPM: 46.8
Sample A Female 52.3
Sample B Female 46.8
Sample C Male 48.8
Sample D Male 47.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 149.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 149.6
Samples: 4

Max nTPM: 157.6
Min nTPM: 141.4
Sample A Male 141.4
Sample B Male 143.2
Sample C Female 157.6
Sample D Female 156.3
Hippocampal formation
nTPM: 129.5
Samples: 4

Max nTPM: 149.5
Min nTPM: 112.8
Sample A Male 149.5
Sample B Male 125.0
Sample C Female 112.8
Sample D Female 130.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 10.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.5
69816774 Antisense, RP_050510_01_H01, Mouse strain C57BL/6J (56 days, male) 12.2
73997151 Antisense, RP_051214_03_F10, Mouse strain C57BL/6J (56 days, male) 8.7

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