MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.6 nTPM
HPA Brain:55.4 nTPM
GTEx:42.6 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:48.0 nTPM
Mouse:200.9 nTPM
Allen mouse:13.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.4
2586 Male, age 75, left hemisphere 49.4
2411 Female, age 72, unknown 46.8
1870 Female, age 42, unknown 46.2
1827 Male, age 72, unknown 45.3
2219 Male, age 76, both hemispheres 42.4
1833 Male, age 53, unknown 38.7
2666 Male, age 74, left hemisphere 38.5
2828 Female, age 72, unknown 36.5
1830 Male, age 51, unknown 35.1
2019 Male, age 18, unknown 34.7
Dorsal raphe nucleus
nTPM: 47.2
2298 Female, age 72, unknown 55.3
2047 Male, age 72, unknown 54.3
2750 Male, age 76, both hemispheres 43.9
2016 Female, age 72, unknown 43.1
1828 Male, age 53, unknown 39.2
Inferior colliculus
nTPM: 44.3
2097 Female, age 72, unknown 54.7
1890 Male, age 53, unknown 43.4
1848 Female, age 42, unknown 40.6
2849 Male, age 72, unknown 38.4
Median raphe nucleus
nTPM: 55.4
2220 Male, age 76, midline 55.4
Periaquaductal grey, anterior
nTPM: 49.5
1947 Male, age 18, unknown 52.5
1795 Male, age 51, unknown 49.9
2502 Female, age 75, unknown 46.2
Periaquaductal grey, dorsal
nTPM: 43.0
1840 Male, age 53, unknown 49.4
2850 Male, age 76, both hemispheres 46.5
2464 Female, age 72, unknown 38.3
1831 Male, age 72, unknown 37.9
Periaquaductal grey, lateral
nTPM: 44.7
2272 Male, age 74, both hemispheres 47.6
2053 Male, age 18, unknown 44.1
2140 Male, age 76, both hemispheres 42.4
Pretectal area
nTPM: 47.3
2224 Female, age 72, unknown 56.3
1944 Female, age 72, unknown 56.1
1816 Male, age 51, unknown 52.1
2273 Male, age 74, both hemispheres 50.5
2667 Female, age 75, unknown 48.4
2007 Male, age 72, unknown 48.1
2825 Male, age 18, unknown 46.0
1815 Male, age 53, unknown 45.7
1817 Female, age 42, unknown 45.4
2316 Male, age 76, right hemisphere 38.0
2407 Male, age 75, both hemispheres 33.5
Red nucleus
nTPM: 35.7
2725 Female, age 75, unknown 42.0
2503 Female, age 72, unknown 41.4
1954 Female, age 42, unknown 40.1
1821 Female, age 72, unknown 38.4
1904 Male, age 53, unknown 37.1
2584 Male, age 75, left hemisphere 36.8
2785 Male, age 18, unknown 34.1
2588 Male, age 74, left hemisphere 33.8
2769 Male, age 72, unknown 32.7
2227 Male, age 72, unknown 32.5
1865 Male, age 51, unknown 32.2
2823 Male, age 76, right hemisphere 27.0
Substantia nigra
nTPM: 47.2
2241 Male, age 72, unknown 63.3
1916 Female, age 42, unknown 55.2
1851 Male, age 51, unknown 50.2
1889 Female, age 72, unknown 50.0
2409 Female, age 72, unknown 46.4
1941 Male, age 53, unknown 46.0
2590 Female, age 75, unknown 43.6
2699 Male, age 18, unknown 41.9
2583 Male, age 75, right hemisphere 41.5
2665 Male, age 74, both hemispheres 33.8
Superior colliculus
nTPM: 39.3
2261 Male, age 18, unknown 51.6
1796 Male, age 53, unknown 43.4
2087 Female, age 72, unknown 42.3
1895 Male, age 76, right hemisphere 38.6
1839 Male, age 51, unknown 38.4
1913 Female, age 42, unknown 38.2
2587 Male, age 74, left hemisphere 37.4
2668 Female, age 75, unknown 36.4
2664 Male, age 75, both hemispheres 33.4
1995 Male, age 72, unknown 33.0
Ventral tegmental area
nTPM: 46.5
1915 Female, age 42, unknown 51.4
1942 Male, age 51, unknown 49.9
2410 Female, age 72, unknown 47.7
2218 Male, age 76, both hemispheres 46.3
2021 Male, age 53, unknown 45.6
2223 Female, age 72, unknown 38.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.6
Samples: 183

Max nTPM: 93.1
Min nTPM: 18.7
Std nTPM: 12.8
Median nTPM: 40.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 93.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 87.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 79.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 78.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 77.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 75.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 74.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 73.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 70.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 67.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 65.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.2
FF:10158-103A5 76 years, female 101.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.3
Samples: 4

Max nTPM: 62.2
Min nTPM: 24.9
Sample A Female 54.2
Sample B Female 43.8
Sample C Male 62.2
Sample D Male 24.9
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 60.0
Min nTPM: 29.8
Sample A Female 29.8
Sample B Female 43.0
Sample C Male 59.2
Sample D Male 60.0
Periaqueductal gray
nTPM: 43.1
Samples: 3

Max nTPM: 51.5
Min nTPM: 36.3
Sample B Female 36.3
Sample C Male 51.5
Sample D Male 41.4
Superior colliculi
nTPM: 46.1
Samples: 4

Max nTPM: 50.8
Min nTPM: 41.2
Sample A Female 46.3
Sample B Female 41.2
Sample C Male 50.8
Sample D Male 46.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 200.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 200.9
Samples: 4

Max nTPM: 205.1
Min nTPM: 193.8
Sample A Male 205.1
Sample B Male 202.0
Sample C Female 193.8
Sample D Female 202.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.2
69816774 Antisense, RP_050510_01_H01, Mouse strain C57BL/6J (56 days, male) 15.1
73997151 Antisense, RP_051214_03_F10, Mouse strain C57BL/6J (56 days, male) 11.3

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