BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:171.3 nTPM
HPA Brain:428.5 nTPM
GTEx:171.3 nTPM
FANTOM5:429.9 Scaled Tags Per Million
Macaque:205.1 nTPM
Mouse:282.4 nTPM
Rat:185.0 nTPM
Pig:241.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 428.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 323.7
2828 Female, age 72, unknown 387.7
2411 Female, age 72, unknown 379.6
2019 Male, age 18, unknown 346.2
1827 Male, age 72, unknown 345.1
1870 Female, age 42, unknown 315.6
1833 Male, age 53, unknown 309.3
2666 Male, age 74, left hemisphere 297.2
2586 Male, age 75, left hemisphere 289.4
1830 Male, age 51, unknown 287.2
2219 Male, age 76, both hemispheres 279.7
Dorsal raphe nucleus
nTPM: 395.5
2298 Female, age 72, unknown 519.0
2047 Male, age 72, unknown 397.5
1828 Male, age 53, unknown 389.2
2750 Male, age 76, both hemispheres 373.6
2016 Female, age 72, unknown 298.3
Inferior colliculus
nTPM: 255.5
2097 Female, age 72, unknown 313.3
1890 Male, age 53, unknown 252.3
1848 Female, age 42, unknown 251.6
2849 Male, age 72, unknown 204.8
Median raphe nucleus
nTPM: 368.8
2220 Male, age 76, midline 368.8
Periaquaductal grey, anterior
nTPM: 343.4
1947 Male, age 18, unknown 373.2
1795 Male, age 51, unknown 367.5
2502 Female, age 75, unknown 289.5
Periaquaductal grey, dorsal
nTPM: 259.5
1831 Male, age 72, unknown 277.7
2850 Male, age 76, both hemispheres 262.8
2464 Female, age 72, unknown 255.7
1840 Male, age 53, unknown 241.8
Periaquaductal grey, lateral
nTPM: 328.8
2272 Male, age 74, both hemispheres 439.4
2053 Male, age 18, unknown 280.0
2140 Male, age 76, both hemispheres 266.9
Pretectal area
nTPM: 345.6
2273 Male, age 74, both hemispheres 452.2
1817 Female, age 42, unknown 381.8
2007 Male, age 72, unknown 377.0
2224 Female, age 72, unknown 371.1
1816 Male, age 51, unknown 370.7
2667 Female, age 75, unknown 359.8
1815 Male, age 53, unknown 357.4
1944 Female, age 72, unknown 350.6
2825 Male, age 18, unknown 280.4
2407 Male, age 75, both hemispheres 258.3
2316 Male, age 76, right hemisphere 242.2
Red nucleus
nTPM: 342.9
2725 Female, age 75, unknown 423.3
1821 Female, age 72, unknown 383.5
2503 Female, age 72, unknown 368.5
1904 Male, age 53, unknown 358.0
2584 Male, age 75, left hemisphere 352.7
1954 Female, age 42, unknown 341.7
1865 Male, age 51, unknown 340.2
2823 Male, age 76, right hemisphere 338.8
2785 Male, age 18, unknown 334.5
2769 Male, age 72, unknown 333.7
2227 Male, age 72, unknown 332.7
2588 Male, age 74, left hemisphere 207.1
Substantia nigra
nTPM: 428.5
1916 Female, age 42, unknown 689.7
1851 Male, age 51, unknown 548.2
1941 Male, age 53, unknown 423.8
2699 Male, age 18, unknown 408.0
2241 Male, age 72, unknown 405.9
2409 Female, age 72, unknown 402.8
2590 Female, age 75, unknown 380.3
1889 Female, age 72, unknown 372.0
2583 Male, age 75, right hemisphere 338.2
2665 Male, age 74, both hemispheres 316.0
Superior colliculus
nTPM: 301.9
2261 Male, age 18, unknown 363.8
1796 Male, age 53, unknown 352.3
2587 Male, age 74, left hemisphere 351.2
2087 Female, age 72, unknown 345.0
1913 Female, age 42, unknown 310.6
1995 Male, age 72, unknown 300.3
2668 Female, age 75, unknown 291.5
1839 Male, age 51, unknown 251.8
2664 Male, age 75, both hemispheres 231.2
1895 Male, age 76, right hemisphere 220.8
Ventral tegmental area
nTPM: 409.6
2410 Female, age 72, unknown 511.2
1915 Female, age 42, unknown 495.2
2218 Male, age 76, both hemispheres 412.5
2223 Female, age 72, unknown 355.5
1942 Male, age 51, unknown 345.3
2021 Male, age 53, unknown 338.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 171.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 171.3
Samples: 183

Max nTPM: 421.5
Min nTPM: 58.7
Std nTPM: 75.7
Median nTPM: 152.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 421.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 387.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 386.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 364.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 359.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 334.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 331.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 323.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 322.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 321.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 316.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 429.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 429.9
FF:10158-103A5 76 years, female 429.9

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 205.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 205.1
Samples: 1

Max nTPM: 205.1
Min nTPM: 205.1
Sample A 205.1
Midbrain
nTPM: 136.2
Samples: 1

Max nTPM: 136.2
Min nTPM: 136.2
Sample A 136.2
Superior colliculi
nTPM: 185.6
Samples: 1

Max nTPM: 185.6
Min nTPM: 185.6
Sample A 185.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 241.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 241.4
Samples: 3

Max nTPM: 257.6
Min nTPM: 210.3
Sample A Female 257.6
Sample B Female 210.3
Sample C Male 256.3
Midbrain
nTPM: 170.0
Samples: 3

Max nTPM: 199.3
Min nTPM: 136.3
Sample B Female 174.4
Sample C Male 199.3
Sample D Male 136.3
Periaqueductal gray
nTPM: 154.9
Samples: 3

Max nTPM: 172.1
Min nTPM: 140.4
Sample B Female 152.2
Sample C Male 172.1
Sample D Male 140.4
Superior colliculi
nTPM: 201.3
Samples: 4

Max nTPM: 231.8
Min nTPM: 180.3
Sample A Female 201.7
Sample B Female 180.3
Sample C Male 231.8
Sample D Male 191.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 282.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 282.4
Samples: 4

Max nTPM: 284.6
Min nTPM: 281.0
Sample A 281.0
Sample B 281.0
Sample C 282.9
Sample D 284.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 185.0
Rat sample Sample description nTPM
Midbrain
nTPM: 185.0
Samples: 4

Max nTPM: 189.8
Min nTPM: 174.0
Sample A 188.0
Sample A 189.8
Sample A 188.0
Sample A 174.0

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