MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.6 nTPM
HPA Brain:157.6 nTPM
GTEx:102.6 nTPM
FANTOM5:347.6 Scaled Tags Per Million
Pig:0.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 157.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.3
2666 Male, age 74, left hemisphere 171.1
2586 Male, age 75, left hemisphere 166.2
1830 Male, age 51, unknown 146.6
1870 Female, age 42, unknown 144.9
1833 Male, age 53, unknown 142.9
2411 Female, age 72, unknown 139.5
2019 Male, age 18, unknown 136.2
1827 Male, age 72, unknown 135.3
2828 Female, age 72, unknown 125.2
2219 Male, age 76, both hemispheres 124.7
Dorsal raphe nucleus
nTPM: 127.9
2750 Male, age 76, both hemispheres 139.4
2016 Female, age 72, unknown 132.2
1828 Male, age 53, unknown 130.3
2298 Female, age 72, unknown 129.0
2047 Male, age 72, unknown 108.6
Inferior colliculus
nTPM: 120.0
2097 Female, age 72, unknown 125.8
1890 Male, age 53, unknown 122.3
1848 Female, age 42, unknown 118.5
2849 Male, age 72, unknown 113.5
Median raphe nucleus
nTPM: 133.6
2220 Male, age 76, midline 133.6
Periaquaductal grey, anterior
nTPM: 135.0
2502 Female, age 75, unknown 154.6
1947 Male, age 18, unknown 133.2
1795 Male, age 51, unknown 117.1
Periaquaductal grey, dorsal
nTPM: 123.7
2464 Female, age 72, unknown 142.8
1831 Male, age 72, unknown 122.6
2850 Male, age 76, both hemispheres 119.5
1840 Male, age 53, unknown 109.7
Periaquaductal grey, lateral
nTPM: 120.3
2053 Male, age 18, unknown 126.0
2140 Male, age 76, both hemispheres 117.8
2272 Male, age 74, both hemispheres 116.9
Pretectal area
nTPM: 129.1
1815 Male, age 53, unknown 147.8
1816 Male, age 51, unknown 143.2
2316 Male, age 76, right hemisphere 141.2
1817 Female, age 42, unknown 136.8
2224 Female, age 72, unknown 133.0
2825 Male, age 18, unknown 131.8
2007 Male, age 72, unknown 130.8
2273 Male, age 74, both hemispheres 125.0
1944 Female, age 72, unknown 121.4
2407 Male, age 75, both hemispheres 112.3
2667 Female, age 75, unknown 96.7
Red nucleus
nTPM: 157.6
2503 Female, age 72, unknown 200.1
2725 Female, age 75, unknown 169.0
2588 Male, age 74, left hemisphere 168.0
2227 Male, age 72, unknown 163.8
1954 Female, age 42, unknown 159.3
1904 Male, age 53, unknown 159.0
1821 Female, age 72, unknown 153.4
2769 Male, age 72, unknown 151.2
1865 Male, age 51, unknown 150.1
2785 Male, age 18, unknown 146.5
2584 Male, age 75, left hemisphere 136.0
2823 Male, age 76, right hemisphere 135.0
Substantia nigra
nTPM: 128.7
2241 Male, age 72, unknown 143.0
2665 Male, age 74, both hemispheres 136.4
2590 Female, age 75, unknown 133.8
1941 Male, age 53, unknown 132.7
1851 Male, age 51, unknown 130.0
1916 Female, age 42, unknown 124.6
2699 Male, age 18, unknown 123.8
2583 Male, age 75, right hemisphere 121.8
2409 Female, age 72, unknown 120.5
1889 Female, age 72, unknown 120.3
Superior colliculus
nTPM: 134.4
1995 Male, age 72, unknown 153.5
1913 Female, age 42, unknown 147.3
2261 Male, age 18, unknown 145.4
2587 Male, age 74, left hemisphere 140.4
2668 Female, age 75, unknown 137.1
1839 Male, age 51, unknown 134.8
2664 Male, age 75, both hemispheres 126.2
2087 Female, age 72, unknown 122.8
1796 Male, age 53, unknown 121.5
1895 Male, age 76, right hemisphere 114.7
Ventral tegmental area
nTPM: 134.8
2223 Female, age 72, unknown 155.7
1942 Male, age 51, unknown 137.5
2218 Male, age 76, both hemispheres 132.3
2021 Male, age 53, unknown 131.7
1915 Female, age 42, unknown 129.9
2410 Female, age 72, unknown 121.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 102.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.6
Samples: 183

Max nTPM: 207.7
Min nTPM: 36.0
Std nTPM: 33.9
Median nTPM: 98.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 207.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 202.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 200.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 191.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 183.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 177.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 171.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 170.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 168.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 167.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 164.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 347.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 347.6
FF:10158-103A5 76 years, female 347.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 0.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.3
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.7
Sample D Male 0.2
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.2
Periaqueductal gray
nTPM: 0.2
Samples: 3

Max nTPM: 0.3
Min nTPM: 0.1
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.1
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo