MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.6 nTPM
HPA Brain:74.1 nTPM
GTEx:36.6 nTPM
FANTOM5:54.9 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:33.7 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 74.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.0
2586 Male, age 75, left hemisphere 101.1
2666 Male, age 74, left hemisphere 69.8
2411 Female, age 72, unknown 66.7
2019 Male, age 18, unknown 66.5
2828 Female, age 72, unknown 66.3
1827 Male, age 72, unknown 65.2
2219 Male, age 76, both hemispheres 61.6
1833 Male, age 53, unknown 58.1
1830 Male, age 51, unknown 58.0
1870 Female, age 42, unknown 56.8
Dorsal raphe nucleus
nTPM: 64.5
2016 Female, age 72, unknown 71.7
2047 Male, age 72, unknown 69.1
1828 Male, age 53, unknown 65.3
2298 Female, age 72, unknown 62.9
2750 Male, age 76, both hemispheres 53.5
Inferior colliculus
nTPM: 64.3
1890 Male, age 53, unknown 72.4
2097 Female, age 72, unknown 63.9
1848 Female, age 42, unknown 62.7
2849 Male, age 72, unknown 58.1
Median raphe nucleus
nTPM: 54.0
2220 Male, age 76, midline 54.0
Periaquaductal grey, anterior
nTPM: 63.1
2502 Female, age 75, unknown 67.4
1795 Male, age 51, unknown 62.1
1947 Male, age 18, unknown 59.9
Periaquaductal grey, dorsal
nTPM: 63.2
1840 Male, age 53, unknown 71.6
1831 Male, age 72, unknown 66.6
2464 Female, age 72, unknown 64.5
2850 Male, age 76, both hemispheres 50.0
Periaquaductal grey, lateral
nTPM: 57.9
2053 Male, age 18, unknown 64.5
2272 Male, age 74, both hemispheres 54.6
2140 Male, age 76, both hemispheres 54.5
Pretectal area
nTPM: 65.2
1817 Female, age 42, unknown 78.2
1816 Male, age 51, unknown 74.0
1944 Female, age 72, unknown 73.6
2007 Male, age 72, unknown 73.6
1815 Male, age 53, unknown 70.1
2407 Male, age 75, both hemispheres 62.7
2667 Female, age 75, unknown 60.8
2825 Male, age 18, unknown 58.6
2224 Female, age 72, unknown 57.8
2273 Male, age 74, both hemispheres 53.8
2316 Male, age 76, right hemisphere 53.8
Red nucleus
nTPM: 62.3
2588 Male, age 74, left hemisphere 71.7
2584 Male, age 75, left hemisphere 66.3
2785 Male, age 18, unknown 65.1
1821 Female, age 72, unknown 64.2
2503 Female, age 72, unknown 64.2
1904 Male, age 53, unknown 63.2
2725 Female, age 75, unknown 62.7
1954 Female, age 42, unknown 62.1
1865 Male, age 51, unknown 59.2
2769 Male, age 72, unknown 57.9
2227 Male, age 72, unknown 57.1
2823 Male, age 76, right hemisphere 54.0
Substantia nigra
nTPM: 74.1
1916 Female, age 42, unknown 89.0
2665 Male, age 74, both hemispheres 81.0
1851 Male, age 51, unknown 79.8
2583 Male, age 75, right hemisphere 76.1
2241 Male, age 72, unknown 75.5
2699 Male, age 18, unknown 73.0
1889 Female, age 72, unknown 70.2
2409 Female, age 72, unknown 67.5
2590 Female, age 75, unknown 65.5
1941 Male, age 53, unknown 63.1
Superior colliculus
nTPM: 64.0
2664 Male, age 75, both hemispheres 80.3
2668 Female, age 75, unknown 70.6
2087 Female, age 72, unknown 67.1
2261 Male, age 18, unknown 63.4
1995 Male, age 72, unknown 62.5
1796 Male, age 53, unknown 60.8
2587 Male, age 74, left hemisphere 60.4
1839 Male, age 51, unknown 59.1
1913 Female, age 42, unknown 58.4
1895 Male, age 76, right hemisphere 57.6
Ventral tegmental area
nTPM: 65.0
2410 Female, age 72, unknown 71.6
1915 Female, age 42, unknown 70.9
1942 Male, age 51, unknown 68.4
2021 Male, age 53, unknown 62.2
2218 Male, age 76, both hemispheres 61.5
2223 Female, age 72, unknown 55.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 183

Max nTPM: 60.1
Min nTPM: 16.1
Std nTPM: 8.2
Median nTPM: 36.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 60.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 59.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 56.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 55.5
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 54.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 54.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 53.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 52.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 52.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 51.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 51.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.9
FF:10158-103A5 76 years, female 54.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.5
Samples: 4

Max nTPM: 33.8
Min nTPM: 25.8
Sample A Female 33.8
Sample B Female 28.4
Sample C Male 25.8
Sample D Male 25.8
Midbrain
nTPM: 26.9
Samples: 4

Max nTPM: 27.8
Min nTPM: 25.0
Sample A Female 27.8
Sample B Female 27.1
Sample C Male 27.6
Sample D Male 25.0
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 23.5
Min nTPM: 22.7
Sample B Female 22.9
Sample C Male 23.5
Sample D Male 22.7
Superior colliculi
nTPM: 26.6
Samples: 4

Max nTPM: 29.8
Min nTPM: 24.6
Sample A Female 29.8
Sample B Female 24.6
Sample C Male 25.9
Sample D Male 26.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 35.4
Min nTPM: 32.9
Sample A Male 32.9
Sample B Male 33.2
Sample C Female 33.1
Sample D Female 35.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68301329 Antisense, RP_041130_01_A09, Mouse strain C57BL/6J (56 days, male) 0.1

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