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  • TISSUE

  • BRAIN

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:366.6 nTPM
HPA Brain:149.4 nTPM
GTEx:366.6 nTPM
FANTOM5:246.8 Scaled Tags Per Million
Pig:135.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 145.6
1981 Female, age 72, midline 217.9
2048 Male, age 55, midline 151.3
2816 Male, age 47, midline 137.2
2565 Male, age 75, midline 116.5
2194 Female, age 79, both hemispheres 105.2
Cervical spinal cord, dorsal horn
nTPM: 149.4
2173 Female, age 72, unknown 222.7
2296 Male, age 66, both hemispheres 191.1
2069 Male, age 47, both hemispheres 155.7
2721 Male, age 90, both hemispheres 126.1
1877 Male, age 55, unknown 118.2
2297 Male, age 75, both hemispheres 82.6
Cervical spinal cord, ventral horn
nTPM: 148.6
2098 Female, age 72, unknown 295.5
2809 Male, age 90, both hemispheres 154.9
2295 Male, age 66, both hemispheres 125.7
2480 Male, age 75, both hemispheres 115.5
2820 Female, age 79, both hemispheres 105.3
2068 Male, age 55, unknown 94.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

366.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 366.6
Samples: 204

Max nTPM: 1143.9
Min nTPM: 131.7
Std nTPM: 115.3
Median nTPM: 355.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1143.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 951.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 660.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 625.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 573.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 564.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 555.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 545.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 529.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 526.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 526.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 524.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 522.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 518.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 510.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 503.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 500.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 495.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 494.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 492.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 488.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 481.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 481.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 475.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 470.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 470.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 464.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 464.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 463.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 459.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 458.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 457.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 456.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 456.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 455.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 450.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 445.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 443.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 441.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 439.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 439.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 438.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 438.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 437.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 437.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 436.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 430.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 430.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 430.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 430.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 428.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 428.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 426.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 424.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 422.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 421.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 421.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 414.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 411.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 411.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 410.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 410.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 408.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 408.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 402.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 401.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 399.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 398.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 397.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 396.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 396.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 396.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 394.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 390.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 389.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 384.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 383.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 383.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 383.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 383.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 382.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 379.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 379.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 377.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 376.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 376.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 375.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 375.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 371.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 371.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 369.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 368.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 368.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 368.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 367.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 367.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 363.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 362.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 360.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 360.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 358.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 358.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 353.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 352.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 351.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 347.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 346.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 346.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 345.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 344.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 344.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 343.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 342.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 340.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 339.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 338.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 338.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 337.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 336.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 334.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 332.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 332.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 331.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 331.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 331.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 330.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 330.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 328.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 328.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 328.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 327.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 326.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 325.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 325.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 324.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 324.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 322.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 322.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 321.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 319.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 316.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 315.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 311.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 310.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 309.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 308.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 307.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 304.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 302.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 300.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 295.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 295.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 294.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 292.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 291.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 283.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 283.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 281.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 280.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 279.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 279.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 278.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 277.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 277.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 276.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 276.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 276.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 276.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 274.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 272.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 268.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 266.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 266.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 266.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 265.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 265.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 264.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 264.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 263.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 262.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 253.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 251.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 242.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 241.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 240.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 238.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 237.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 237.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 234.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 233.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 230.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 230.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 228.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 220.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 204.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 203.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 199.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 195.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 181.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 165.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 159.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 156.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 156.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 131.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

246.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 246.8
FF:10159-103A6 76 years, female 260.4
FF:10181-103D1 60 years, female 233.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 133.9
Samples: 4

Max nTPM: 185.6
Min nTPM: 98.9
Sample A Female 101.4
Sample B Female 149.5
Sample C Male 185.6
Sample D Male 98.9
Ventral spinal cord
nTPM: 135.3
Samples: 4

Max nTPM: 144.3
Min nTPM: 126.7
Sample A Female 126.7
Sample B Female 144.3
Sample C Male 138.6
Sample D Male 131.7

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