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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:127.2 nTPM
HPA Brain:99.4 nTPM
GTEx:127.2 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:48.4 nTPM
Mouse:38.1 nTPM
Allen mouse:5.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.4
Sample id Sample description nTPM
Amygdala
nTPM: 99.4
2814 Male, age 76, right hemisphere 124.9
2695 Female, age 67, right hemisphere 109.6
2514 Male, age 75, right hemisphere 96.5
1987 Female, age 91, left hemisphere 96.4
2517 Female, age 94, left hemisphere 69.5
Basal amygdala
nTPM: 65.6
1955 Male, age 76, both hemispheres 86.6
2609 Male, age 75, right hemisphere 78.3
2110 Male, age 80, left hemisphere 66.4
2243 Female, age 91, right hemisphere 64.9
2685 Female, age 94, left hemisphere 55.2
2827 Female, age 67, right hemisphere 42.1
Central amygdala
nTPM: 76.3
1905 Male, age 76, both hemispheres 89.5
2515 Male, age 75, right hemisphere 84.8
2701 Female, age 91, right hemisphere 75.9
2826 Female, age 94, left hemisphere 73.6
2239 Male, age 80, left hemisphere 57.9
Corticomedial amygdala
nTPM: 67.2
2428 Male, age 75, right hemisphere 90.8
2240 Male, age 76, both hemispheres 80.7
2242 Female, age 91, right hemisphere 76.4
2829 Male, age 80, left hemisphere 59.8
2429 Female, age 94, left hemisphere 59.0
2535 Female, age 67, right hemisphere 36.4
Lateral amygdala
nTPM: 68.7
1883 Male, age 76, both hemispheres 101.8
2256 Male, age 80, left hemisphere 73.8
2516 Male, age 75, right hemisphere 69.2
2255 Female, age 91, right hemisphere 58.6
2534 Female, age 94, left hemisphere 56.6
2830 Female, age 67, right hemisphere 52.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 127.2
Samples: 181

Max nTPM: 298.9
Min nTPM: 39.8
Std nTPM: 42.5
Median nTPM: 117.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 298.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 288.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 278.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 261.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 250.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 217.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 213.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 210.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 208.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 207.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 205.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 204.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 200.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 189.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 187.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 186.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 185.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 182.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 181.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 175.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 174.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 174.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 173.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 172.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 171.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 169.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 168.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 167.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 166.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 165.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 160.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 153.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 152.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 151.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 151.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 151.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 151.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 151.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 151.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 150.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 149.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 149.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 149.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 149.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 148.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 148.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 148.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 147.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 143.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 142.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 142.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 141.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 141.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 140.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 139.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 139.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 139.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 138.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 138.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 137.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 135.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 135.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 134.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 134.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 133.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 133.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 131.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 130.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 130.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 129.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 128.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 128.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 128.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 127.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 127.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 127.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 126.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 126.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 126.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 123.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 123.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 123.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 123.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 122.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 121.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 121.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 120.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 118.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 118.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 118.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 117.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 117.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 116.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 116.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 115.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 115.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 114.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 114.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 113.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 113.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 112.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 112.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 112.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 111.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 111.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 111.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 111.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 111.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 110.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 109.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 109.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 109.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 109.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 108.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 108.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 108.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 108.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 107.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 107.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 107.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 107.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 106.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 106.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 106.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 106.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 105.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 105.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 104.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 103.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 100.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 100.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 100.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 100.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 98.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 98.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 98.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 97.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 97.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 97.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 97.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 97.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 96.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 96.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 96.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 95.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 94.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 94.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 93.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 92.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 92.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 91.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 91.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 91.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 91.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 91.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 90.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 90.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 89.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 88.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 88.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 88.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 88.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 87.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 87.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 82.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 81.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 81.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 80.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 76.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 73.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 72.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 72.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 70.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 69.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 68.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 66.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 60.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 58.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 57.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 39.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 84.2
FF:10151-102I7 76 years, female 84.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.4
Pig sample Sample description nTPM
Amygdala
nTPM: 48.4
Samples: 4

Max nTPM: 68.9
Min nTPM: 30.0
Sample A Female 68.9
Sample B Female 53.0
Sample C Male 41.5
Sample D Male 30.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 38.1
Samples: 4

Max nTPM: 43.7
Min nTPM: 35.0
Sample A Male 36.8
Sample B Male 35.0
Sample C Female 43.7
Sample D Female 36.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.0
75774115 Antisense, RP_060530_01_B11, Mouse strain C57BL/6J (56 days, male) 6.1
293915 Antisense, RP_040617_01_G02, Mouse strain C57BL/6J (56 days, male) 3.9

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