A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
45.6
nTPM
Schmiedel:
103.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
Memory B-cell nTPM: 1.7
Samples: 6
Max nTPM: 3.6
Min nTPM: 0.7
P10809_1017
3.6
P10809_1025
1.9
P10809_1044
0.8
P10809_1063
1.8
P10809_1092
0.7
P10809_1105
1.7
Naive B-cell nTPM: 2.4
Samples: 6
Max nTPM: 5.2
Min nTPM: 1.2
P10809_1011
2.7
P10809_1029
2.1
P10809_1048
5.2
P10809_1067
1.8
P10809_1091
1.2
P10809_1104
1.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 27.3
Samples: 4
Max nTPM: 34.0
Min nTPM: 23.4
RHH5310_R3677
34.0
RHH5218_R3590
23.4
RHH5247_R3619
26.1
RHH5276_R3648
25.6
Naive B-cell nTPM: 24.5
Samples: 4
Max nTPM: 31.0
Min nTPM: 19.4
RHH5308_R3675
24.4
RHH5216_R3588
19.4
RHH5245_R3617
31.0
RHH5274_R3646
23.1
Non-switched memory B-cell nTPM: 20.5
Samples: 4
Max nTPM: 23.1
Min nTPM: 17.8
RHH5309_R3676
17.8
RHH5217_R3589
18.6
RHH5246_R3618
23.1
RHH5275_R3647
22.3
Plasmablast nTPM: 45.7
Samples: 4
Max nTPM: 54.6
Min nTPM: 30.5
RHH5312_R3679
50.3
RHH5220_R3592
47.2
RHH5249_R3621
54.6
RHH5278_R3650
30.5
Switched memory B-cell nTPM: 25.0
Samples: 4
Max nTPM: 28.3
Min nTPM: 17.5
RHH5311_R3678
27.5
RHH5219_R3591
26.8
RHH5248_R3620
28.3
RHH5277_R3649
17.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
103.8
Schmiedel sample id
TPM
Naive B-cell TPM: 103.8
Samples: 91
Max TPM: 166.6
Min TPM: 71.9
B_CELL_NAIVE_1
166.6
B_CELL_NAIVE_2
141.6
B_CELL_NAIVE_3
141.0
B_CELL_NAIVE_4
138.5
B_CELL_NAIVE_5
133.1
B_CELL_NAIVE_6
131.2
B_CELL_NAIVE_7
126.4
B_CELL_NAIVE_8
125.3
B_CELL_NAIVE_9
122.9
B_CELL_NAIVE_10
122.7
B_CELL_NAIVE_11
121.7
B_CELL_NAIVE_12
121.4
B_CELL_NAIVE_13
121.0
B_CELL_NAIVE_14
120.0
B_CELL_NAIVE_15
119.4
B_CELL_NAIVE_16
117.8
B_CELL_NAIVE_17
117.0
B_CELL_NAIVE_18
116.9
B_CELL_NAIVE_19
116.5
B_CELL_NAIVE_20
116.4
B_CELL_NAIVE_21
115.1
B_CELL_NAIVE_22
115.1
B_CELL_NAIVE_23
113.0
B_CELL_NAIVE_24
111.9
B_CELL_NAIVE_25
111.5
B_CELL_NAIVE_26
111.1
B_CELL_NAIVE_27
110.9
B_CELL_NAIVE_28
110.2
B_CELL_NAIVE_29
109.5
B_CELL_NAIVE_30
109.5
B_CELL_NAIVE_31
109.4
B_CELL_NAIVE_32
107.7
B_CELL_NAIVE_33
107.6
B_CELL_NAIVE_34
107.0
B_CELL_NAIVE_35
106.4
B_CELL_NAIVE_36
106.3
B_CELL_NAIVE_37
105.5
B_CELL_NAIVE_38
105.1
B_CELL_NAIVE_39
104.7
B_CELL_NAIVE_40
104.6
B_CELL_NAIVE_41
104.1
B_CELL_NAIVE_42
104.0
B_CELL_NAIVE_43
103.8
B_CELL_NAIVE_44
103.7
B_CELL_NAIVE_45
103.6
B_CELL_NAIVE_46
103.5
B_CELL_NAIVE_47
103.1
B_CELL_NAIVE_48
102.8
B_CELL_NAIVE_49
102.3
B_CELL_NAIVE_50
102.2
B_CELL_NAIVE_51
101.5
B_CELL_NAIVE_52
101.4
B_CELL_NAIVE_53
101.4
B_CELL_NAIVE_54
101.1
B_CELL_NAIVE_55
99.0
B_CELL_NAIVE_56
99.0
B_CELL_NAIVE_57
99.0
B_CELL_NAIVE_58
98.3
B_CELL_NAIVE_59
96.4
B_CELL_NAIVE_60
96.1
B_CELL_NAIVE_61
95.5
B_CELL_NAIVE_62
95.5
B_CELL_NAIVE_63
94.7
B_CELL_NAIVE_64
94.6
B_CELL_NAIVE_65
93.8
B_CELL_NAIVE_66
93.5
B_CELL_NAIVE_67
93.5
B_CELL_NAIVE_68
93.0
B_CELL_NAIVE_69
92.0
B_CELL_NAIVE_70
91.9
B_CELL_NAIVE_71
91.6
B_CELL_NAIVE_72
91.0
B_CELL_NAIVE_73
90.4
B_CELL_NAIVE_74
88.9
B_CELL_NAIVE_75
88.4
B_CELL_NAIVE_76
88.0
B_CELL_NAIVE_77
87.8
B_CELL_NAIVE_78
87.6
B_CELL_NAIVE_79
86.9
B_CELL_NAIVE_80
86.1
B_CELL_NAIVE_81
83.5
B_CELL_NAIVE_82
82.8
B_CELL_NAIVE_83
82.7
B_CELL_NAIVE_84
82.3
B_CELL_NAIVE_85
81.6
B_CELL_NAIVE_86
81.1
B_CELL_NAIVE_87
80.2
B_CELL_NAIVE_88
78.9
B_CELL_NAIVE_89
78.2
B_CELL_NAIVE_90
73.0
B_CELL_NAIVE_91
71.9
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