A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
32.0
nTPM
Schmiedel:
95.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
Classical monocyte nTPM: 2.6
Samples: 6
Max nTPM: 3.4
Min nTPM: 2.1
P10809_1003
2.2
P10809_1020
3.4
P10809_1039
2.2
P10809_1058
2.1
P10809_1080
2.6
P10809_1107
2.8
Intermediate monocyte nTPM: 2.7
Samples: 6
Max nTPM: 5.1
Min nTPM: 0.8
P10809_1004
2.1
P10809_1023
2.5
P10809_1042
5.1
P10809_1061
0.8
P10809_1081
3.4
P10809_1108
2.5
Non-classical monocyte nTPM: 2.0
Samples: 5
Max nTPM: 3.2
Min nTPM: 0.8
P10809_1005
2.7
P10809_1053
1.2
P10809_1072
0.8
P10809_1082
3.2
P10809_1109
1.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.0
Monaco sample
nTPM
Classical monocyte nTPM: 24.3
Samples: 4
Max nTPM: 28.4
Min nTPM: 17.6
RHH5313_R3680
26.8
RHH5221_R3593
28.4
RHH5250_R3622
17.6
RHH5279_R3651
24.2
Intermediate monocyte nTPM: 32.1
Samples: 4
Max nTPM: 41.9
Min nTPM: 26.1
RHH5314_R3681
26.1
RHH5222_R3594
28.8
RHH5251_R3623
41.9
RHH5280_R3652
31.4
Non-classical monocyte nTPM: 24.0
Samples: 4
Max nTPM: 28.4
Min nTPM: 21.4
RHH5315_R3682
22.9
RHH5223_R3595
21.4
RHH5252_R3624
23.2
RHH5281_R3653
28.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.1
Schmiedel sample id
TPM
Classical monocyte TPM: 75.2
Samples: 91
Max TPM: 97.2
Min TPM: 58.3
MONOCYTES_1
97.2
MONOCYTES_2
96.5
MONOCYTES_3
95.8
MONOCYTES_4
94.6
MONOCYTES_5
94.5
MONOCYTES_6
94.5
MONOCYTES_7
90.9
MONOCYTES_8
87.8
MONOCYTES_9
86.6
MONOCYTES_10
86.1
MONOCYTES_11
85.5
MONOCYTES_12
84.5
MONOCYTES_13
84.1
MONOCYTES_14
84.1
MONOCYTES_15
83.9
MONOCYTES_16
83.6
MONOCYTES_17
83.3
MONOCYTES_18
83.1
MONOCYTES_19
81.9
MONOCYTES_20
81.4
MONOCYTES_21
80.9
MONOCYTES_22
80.8
MONOCYTES_23
80.8
MONOCYTES_24
79.9
MONOCYTES_25
79.8
MONOCYTES_26
79.6
MONOCYTES_27
79.6
MONOCYTES_28
79.4
MONOCYTES_29
79.0
MONOCYTES_30
78.6
MONOCYTES_31
77.7
MONOCYTES_32
77.6
MONOCYTES_33
77.1
MONOCYTES_34
77.0
MONOCYTES_35
77.0
MONOCYTES_36
77.0
MONOCYTES_37
76.8
MONOCYTES_38
76.8
MONOCYTES_39
76.7
MONOCYTES_40
76.5
MONOCYTES_41
76.0
MONOCYTES_42
76.0
MONOCYTES_43
76.0
MONOCYTES_44
75.7
MONOCYTES_45
75.3
MONOCYTES_46
75.3
MONOCYTES_47
75.0
MONOCYTES_48
74.9
MONOCYTES_49
74.8
MONOCYTES_50
74.6
MONOCYTES_51
74.3
MONOCYTES_52
74.0
MONOCYTES_53
73.5
MONOCYTES_54
73.1
MONOCYTES_55
73.0
MONOCYTES_56
73.0
MONOCYTES_57
72.8
MONOCYTES_58
71.3
MONOCYTES_59
71.3
MONOCYTES_60
70.8
MONOCYTES_61
70.8
MONOCYTES_62
70.5
MONOCYTES_63
70.3
MONOCYTES_64
70.3
MONOCYTES_65
69.6
MONOCYTES_66
69.6
MONOCYTES_67
69.5
MONOCYTES_68
68.9
MONOCYTES_69
68.8
MONOCYTES_70
68.5
MONOCYTES_71
68.1
MONOCYTES_72
67.2
MONOCYTES_73
67.0
MONOCYTES_74
65.9
MONOCYTES_75
65.1
MONOCYTES_76
64.9
MONOCYTES_77
64.7
MONOCYTES_78
64.7
MONOCYTES_79
64.5
MONOCYTES_80
64.1
MONOCYTES_81
63.8
MONOCYTES_82
63.1
MONOCYTES_83
62.9
MONOCYTES_84
62.8
MONOCYTES_85
62.4
MONOCYTES_86
62.0
MONOCYTES_87
61.8
MONOCYTES_88
61.1
MONOCYTES_89
60.7
MONOCYTES_90
59.9
MONOCYTES_91
58.3
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Non-classical monocyte TPM: 95.1
Samples: 90
Max TPM: 144.1
Min TPM: 54.2
M2_1
144.1
M2_2
132.4
M2_3
122.9
M2_4
119.5
M2_5
118.9
M2_6
118.7
M2_7
118.2
M2_8
118.1
M2_9
116.9
M2_10
115.6
M2_11
114.2
M2_12
113.7
M2_13
113.6
M2_14
113.0
M2_15
112.7
M2_16
111.6
M2_17
110.2
M2_18
108.2
M2_19
106.4
M2_20
106.0
M2_21
106.0
M2_22
105.6
M2_23
105.5
M2_24
105.5
M2_25
105.4
M2_26
105.2
M2_27
103.6
M2_28
103.3
M2_29
102.0
M2_30
101.8
M2_31
100.7
M2_32
100.6
M2_33
100.2
M2_34
99.9
M2_35
99.2
M2_36
98.6
M2_37
97.4
M2_38
97.1
M2_39
96.8
M2_40
96.2
M2_41
96.2
M2_42
96.0
M2_43
95.2
M2_44
95.1
M2_45
93.7
M2_46
92.9
M2_47
92.0
M2_48
91.2
M2_49
90.9
M2_50
90.5
M2_51
90.5
M2_52
90.5
M2_53
89.6
M2_54
89.3
M2_55
89.0
M2_56
88.4
M2_57
88.2
M2_58
87.6
M2_59
87.5
M2_60
87.2
M2_61
87.1
M2_62
86.6
M2_63
86.6
M2_64
85.4
M2_65
85.3
M2_66
85.2
M2_67
85.1
M2_68
84.4
M2_69
83.5
M2_70
83.4
M2_71
83.1
M2_72
82.5
M2_73
82.4
M2_74
81.2
M2_75
80.6
M2_76
80.4
M2_77
79.9
M2_78
78.1
M2_79
78.0
M2_80
77.7
M2_81
77.6
M2_82
77.5
M2_83
75.1
M2_84
74.9
M2_85
74.5
M2_86
73.5
M2_87
73.5
M2_88
68.1
M2_89
65.2
M2_90
54.2
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