MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.3 nTPM
HPA Brain:56.5 nTPM
GTEx:37.3 nTPM
FANTOM5:29.8 Scaled Tags Per Million
Pig:62.8 nTPM
Mouse:48.5 nTPM
Allen mouse:5.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 56.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.2
2586 Male, age 75, left hemisphere 68.8
1827 Male, age 72, unknown 56.9
2828 Female, age 72, unknown 50.6
2219 Male, age 76, both hemispheres 49.9
2666 Male, age 74, left hemisphere 47.4
1833 Male, age 53, unknown 47.2
2411 Female, age 72, unknown 45.2
1870 Female, age 42, unknown 44.2
2019 Male, age 18, unknown 42.6
1830 Male, age 51, unknown 39.3
Dorsal raphe nucleus
nTPM: 46.9
2298 Female, age 72, unknown 51.7
2016 Female, age 72, unknown 48.0
2047 Male, age 72, unknown 47.6
1828 Male, age 53, unknown 45.8
2750 Male, age 76, both hemispheres 41.5
Inferior colliculus
nTPM: 56.5
2097 Female, age 72, unknown 59.2
2849 Male, age 72, unknown 58.4
1848 Female, age 42, unknown 54.6
1890 Male, age 53, unknown 53.7
Median raphe nucleus
nTPM: 49.4
2220 Male, age 76, midline 49.4
Periaquaductal grey, anterior
nTPM: 56.1
2502 Female, age 75, unknown 59.3
1795 Male, age 51, unknown 57.5
1947 Male, age 18, unknown 51.7
Periaquaductal grey, dorsal
nTPM: 56.0
1840 Male, age 53, unknown 73.8
2850 Male, age 76, both hemispheres 51.1
1831 Male, age 72, unknown 50.3
2464 Female, age 72, unknown 48.9
Periaquaductal grey, lateral
nTPM: 47.4
2053 Male, age 18, unknown 53.5
2140 Male, age 76, both hemispheres 49.9
2272 Male, age 74, both hemispheres 38.8
Pretectal area
nTPM: 55.2
1816 Male, age 51, unknown 66.9
1944 Female, age 72, unknown 60.9
2007 Male, age 72, unknown 59.1
2224 Female, age 72, unknown 59.0
1817 Female, age 42, unknown 58.9
1815 Male, age 53, unknown 55.4
2825 Male, age 18, unknown 54.9
2407 Male, age 75, both hemispheres 52.9
2316 Male, age 76, right hemisphere 48.6
2667 Female, age 75, unknown 46.1
2273 Male, age 74, both hemispheres 44.3
Red nucleus
nTPM: 40.7
2584 Male, age 75, left hemisphere 48.4
2725 Female, age 75, unknown 45.1
2588 Male, age 74, left hemisphere 42.6
2785 Male, age 18, unknown 42.4
1821 Female, age 72, unknown 41.7
2503 Female, age 72, unknown 41.7
1954 Female, age 42, unknown 40.2
2769 Male, age 72, unknown 39.5
2227 Male, age 72, unknown 38.8
2823 Male, age 76, right hemisphere 36.4
1865 Male, age 51, unknown 36.2
1904 Male, age 53, unknown 34.9
Substantia nigra
nTPM: 54.5
1916 Female, age 42, unknown 64.9
2241 Male, age 72, unknown 64.8
2665 Male, age 74, both hemispheres 56.6
1889 Female, age 72, unknown 55.0
1851 Male, age 51, unknown 54.3
2699 Male, age 18, unknown 52.2
2590 Female, age 75, unknown 50.4
2409 Female, age 72, unknown 49.8
1941 Male, age 53, unknown 48.9
2583 Male, age 75, right hemisphere 47.9
Superior colliculus
nTPM: 52.1
2664 Male, age 75, both hemispheres 70.0
1796 Male, age 53, unknown 59.5
1839 Male, age 51, unknown 55.8
2668 Female, age 75, unknown 55.6
2261 Male, age 18, unknown 55.3
2087 Female, age 72, unknown 53.8
1895 Male, age 76, right hemisphere 47.5
2587 Male, age 74, left hemisphere 46.8
1913 Female, age 42, unknown 39.1
1995 Male, age 72, unknown 37.9
Ventral tegmental area
nTPM: 51.4
2410 Female, age 72, unknown 55.2
1915 Female, age 42, unknown 54.2
2218 Male, age 76, both hemispheres 53.2
1942 Male, age 51, unknown 52.0
2223 Female, age 72, unknown 47.5
2021 Male, age 53, unknown 46.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.3
Samples: 183

Max nTPM: 82.9
Min nTPM: 11.7
Std nTPM: 10.3
Median nTPM: 37.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 82.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 65.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 64.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 61.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 59.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 59.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 56.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 55.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 53.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 53.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 29.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.8
FF:10158-103A5 76 years, female 29.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 62.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.5
Samples: 4

Max nTPM: 73.8
Min nTPM: 34.9
Sample A Female 73.8
Sample B Female 47.3
Sample C Male 57.9
Sample D Male 34.9
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 75.4
Min nTPM: 52.0
Sample A Female 55.3
Sample B Female 52.0
Sample C Male 68.5
Sample D Male 75.4
Periaqueductal gray
nTPM: 50.5
Samples: 3

Max nTPM: 55.9
Min nTPM: 43.6
Sample B Female 52.1
Sample C Male 55.9
Sample D Male 43.6
Superior colliculi
nTPM: 60.1
Samples: 4

Max nTPM: 87.3
Min nTPM: 43.3
Sample A Female 87.3
Sample B Female 43.3
Sample C Male 54.9
Sample D Male 54.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.5
Samples: 4

Max nTPM: 51.6
Min nTPM: 46.7
Sample A Male 51.6
Sample B Male 48.6
Sample C Female 47.2
Sample D Female 46.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
71211578 Antisense, RP_050816_01_H02, Mouse strain C57BL/6J (56 days, male) 5.5

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