MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.0 nTPM
HPA Brain:32.9 nTPM
GTEx:70.0 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:64.4 nTPM
Allen mouse:5.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
2219 Male, age 76, both hemispheres 29.8
2411 Female, age 72, unknown 27.6
1827 Male, age 72, unknown 27.1
2019 Male, age 18, unknown 26.4
2828 Female, age 72, unknown 24.7
1870 Female, age 42, unknown 24.4
1833 Male, age 53, unknown 23.0
1830 Male, age 51, unknown 21.1
2666 Male, age 74, left hemisphere 18.2
2586 Male, age 75, left hemisphere 17.6
Dorsal raphe nucleus
nTPM: 27.1
2298 Female, age 72, unknown 34.5
2047 Male, age 72, unknown 27.4
2750 Male, age 76, both hemispheres 26.4
1828 Male, age 53, unknown 25.3
2016 Female, age 72, unknown 22.0
Inferior colliculus
nTPM: 24.6
2097 Female, age 72, unknown 29.7
1890 Male, age 53, unknown 25.7
1848 Female, age 42, unknown 23.1
2849 Male, age 72, unknown 19.7
Median raphe nucleus
nTPM: 32.4
2220 Male, age 76, midline 32.4
Periaquaductal grey, anterior
nTPM: 27.1
1947 Male, age 18, unknown 29.5
1795 Male, age 51, unknown 26.8
2502 Female, age 75, unknown 24.9
Periaquaductal grey, dorsal
nTPM: 23.9
2850 Male, age 76, both hemispheres 26.6
1831 Male, age 72, unknown 23.4
2464 Female, age 72, unknown 23.3
1840 Male, age 53, unknown 22.2
Periaquaductal grey, lateral
nTPM: 24.5
2272 Male, age 74, both hemispheres 28.2
2140 Male, age 76, both hemispheres 24.4
2053 Male, age 18, unknown 20.9
Pretectal area
nTPM: 30.0
1944 Female, age 72, unknown 38.2
1816 Male, age 51, unknown 36.9
1817 Female, age 42, unknown 35.7
2007 Male, age 72, unknown 34.0
1815 Male, age 53, unknown 33.3
2667 Female, age 75, unknown 31.9
2224 Female, age 72, unknown 29.3
2273 Male, age 74, both hemispheres 28.4
2825 Male, age 18, unknown 22.1
2316 Male, age 76, right hemisphere 21.0
2407 Male, age 75, both hemispheres 19.4
Red nucleus
nTPM: 23.7
2725 Female, age 75, unknown 31.2
1821 Female, age 72, unknown 27.9
2503 Female, age 72, unknown 25.3
2785 Male, age 18, unknown 25.2
1954 Female, age 42, unknown 24.7
1904 Male, age 53, unknown 24.2
1865 Male, age 51, unknown 24.1
2823 Male, age 76, right hemisphere 23.1
2227 Male, age 72, unknown 21.6
2769 Male, age 72, unknown 20.9
2588 Male, age 74, left hemisphere 18.1
2584 Male, age 75, left hemisphere 18.0
Substantia nigra
nTPM: 32.9
1916 Female, age 42, unknown 47.3
2241 Male, age 72, unknown 40.5
1851 Male, age 51, unknown 39.6
1889 Female, age 72, unknown 35.6
1941 Male, age 53, unknown 35.0
2699 Male, age 18, unknown 32.4
2409 Female, age 72, unknown 29.8
2665 Male, age 74, both hemispheres 24.7
2590 Female, age 75, unknown 23.3
2583 Male, age 75, right hemisphere 20.7
Superior colliculus
nTPM: 24.3
2087 Female, age 72, unknown 30.8
2261 Male, age 18, unknown 27.9
2587 Male, age 74, left hemisphere 26.5
1796 Male, age 53, unknown 26.4
2668 Female, age 75, unknown 24.7
1913 Female, age 42, unknown 23.5
1895 Male, age 76, right hemisphere 22.6
2664 Male, age 75, both hemispheres 22.1
1995 Male, age 72, unknown 21.1
1839 Male, age 51, unknown 17.5
Ventral tegmental area
nTPM: 31.4
2218 Male, age 76, both hemispheres 38.4
2410 Female, age 72, unknown 36.5
1915 Female, age 42, unknown 34.6
1942 Male, age 51, unknown 29.6
2223 Female, age 72, unknown 25.1
2021 Male, age 53, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.0
Samples: 183

Max nTPM: 128.8
Min nTPM: 33.9
Std nTPM: 17.5
Median nTPM: 67.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 128.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 122.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 117.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 117.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 116.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 112.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 112.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 111.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 111.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 109.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 105.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.1
FF:10158-103A5 76 years, female 42.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.5
Samples: 4

Max nTPM: 40.5
Min nTPM: 26.0
Sample A Female 40.5
Sample B Female 28.0
Sample C Male 39.3
Sample D Male 26.0
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 37.3
Min nTPM: 22.6
Sample A Female 37.3
Sample B Female 35.6
Sample C Male 27.6
Sample D Male 22.6
Periaqueductal gray
nTPM: 37.3
Samples: 3

Max nTPM: 41.5
Min nTPM: 34.1
Sample B Female 34.1
Sample C Male 41.5
Sample D Male 36.4
Superior colliculi
nTPM: 29.9
Samples: 4

Max nTPM: 32.6
Min nTPM: 26.7
Sample A Female 32.6
Sample B Female 31.7
Sample C Male 26.7
Sample D Male 28.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.4
Samples: 4

Max nTPM: 67.8
Min nTPM: 60.4
Sample A Male 67.8
Sample B Male 65.7
Sample C Female 60.4
Sample D Female 63.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
545089 Antisense, RP_040810_02_H08, Mouse strain C57BL/6J (56 days, male) 5.2

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