MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.1 nTPM
HPA Brain:31.2 nTPM
GTEx:42.1 nTPM
FANTOM5:44.7 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:21.9 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2586 Male, age 75, left hemisphere 39.0
1870 Female, age 42, unknown 31.7
2666 Male, age 74, left hemisphere 30.7
2828 Female, age 72, unknown 29.2
1830 Male, age 51, unknown 26.6
1833 Male, age 53, unknown 26.4
2411 Female, age 72, unknown 25.6
2019 Male, age 18, unknown 24.5
1827 Male, age 72, unknown 23.8
2219 Male, age 76, both hemispheres 22.8
Dorsal raphe nucleus
nTPM: 24.4
2016 Female, age 72, unknown 29.3
2750 Male, age 76, both hemispheres 27.0
2047 Male, age 72, unknown 24.3
1828 Male, age 53, unknown 23.8
2298 Female, age 72, unknown 17.7
Inferior colliculus
nTPM: 26.7
1890 Male, age 53, unknown 28.6
2849 Male, age 72, unknown 27.4
1848 Female, age 42, unknown 25.8
2097 Female, age 72, unknown 25.1
Median raphe nucleus
nTPM: 20.1
2220 Male, age 76, midline 20.1
Periaquaductal grey, anterior
nTPM: 29.7
2502 Female, age 75, unknown 34.5
1947 Male, age 18, unknown 30.1
1795 Male, age 51, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 22.4
2464 Female, age 72, unknown 24.7
1840 Male, age 53, unknown 23.9
2850 Male, age 76, both hemispheres 21.4
1831 Male, age 72, unknown 19.6
Periaquaductal grey, lateral
nTPM: 21.6
2140 Male, age 76, both hemispheres 23.3
2053 Male, age 18, unknown 22.4
2272 Male, age 74, both hemispheres 19.2
Pretectal area
nTPM: 23.2
2007 Male, age 72, unknown 28.0
1815 Male, age 53, unknown 26.5
2407 Male, age 75, both hemispheres 24.9
2316 Male, age 76, right hemisphere 24.5
1817 Female, age 42, unknown 24.4
2825 Male, age 18, unknown 23.6
1816 Male, age 51, unknown 22.3
1944 Female, age 72, unknown 21.9
2224 Female, age 72, unknown 21.0
2273 Male, age 74, both hemispheres 19.6
2667 Female, age 75, unknown 18.0
Red nucleus
nTPM: 31.2
2588 Male, age 74, left hemisphere 41.6
2503 Female, age 72, unknown 37.5
2769 Male, age 72, unknown 32.4
1865 Male, age 51, unknown 31.9
2584 Male, age 75, left hemisphere 31.9
2227 Male, age 72, unknown 31.5
1904 Male, age 53, unknown 31.3
2785 Male, age 18, unknown 30.9
1954 Female, age 42, unknown 28.0
1821 Female, age 72, unknown 27.6
2725 Female, age 75, unknown 27.0
2823 Male, age 76, right hemisphere 23.2
Substantia nigra
nTPM: 26.1
2590 Female, age 75, unknown 29.4
2665 Male, age 74, both hemispheres 29.0
2699 Male, age 18, unknown 27.0
1851 Male, age 51, unknown 26.9
2241 Male, age 72, unknown 26.8
2583 Male, age 75, right hemisphere 26.7
1889 Female, age 72, unknown 24.9
2409 Female, age 72, unknown 24.2
1941 Male, age 53, unknown 23.7
1916 Female, age 42, unknown 22.0
Superior colliculus
nTPM: 25.4
2587 Male, age 74, left hemisphere 28.7
2664 Male, age 75, both hemispheres 28.4
2668 Female, age 75, unknown 27.6
1839 Male, age 51, unknown 27.1
1913 Female, age 42, unknown 26.5
2261 Male, age 18, unknown 25.1
1895 Male, age 76, right hemisphere 24.0
1995 Male, age 72, unknown 24.0
1796 Male, age 53, unknown 22.9
2087 Female, age 72, unknown 19.2
Ventral tegmental area
nTPM: 23.8
1942 Male, age 51, unknown 26.7
1915 Female, age 42, unknown 26.0
2410 Female, age 72, unknown 23.7
2223 Female, age 72, unknown 23.5
2021 Male, age 53, unknown 22.6
2218 Male, age 76, both hemispheres 20.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.1
Samples: 183

Max nTPM: 113.1
Min nTPM: 15.4
Std nTPM: 17.4
Median nTPM: 37.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 113.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 95.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 85.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 82.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 81.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 80.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 80.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 78.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 76.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 75.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.7
FF:10158-103A5 76 years, female 44.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 12.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.3
Samples: 4

Max nTPM: 13.9
Min nTPM: 10.8
Sample A Female 13.9
Sample B Female 12.5
Sample C Male 10.8
Sample D Male 12.1
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 16.3
Min nTPM: 9.4
Sample A Female 16.3
Sample B Female 14.0
Sample C Male 9.4
Sample D Male 11.7
Periaqueductal gray
nTPM: 12.2
Samples: 3

Max nTPM: 12.4
Min nTPM: 12.1
Sample B Female 12.4
Sample C Male 12.1
Sample D Male 12.1
Superior colliculi
nTPM: 11.3
Samples: 4

Max nTPM: 12.2
Min nTPM: 10.7
Sample A Female 11.6
Sample B Female 10.7
Sample C Male 10.7
Sample D Male 12.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.0
Sample A Male 22.6
Sample B Male 25.1
Sample C Female 20.7
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68546305 Antisense, RP_050120_02_C11, Mouse strain C57BL/6J (56 days, male) 0.5

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