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BETA
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EVOLUTIONARY MIDBRAIN Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MIDBRAIN - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:5667.1 nTPM
HPA Brain:8719.5 nTPM
GTEx:5667.1 nTPM
FANTOM5:3607.2 Scaled Tags Per Million
Macaque:863.6 nTPM
Mouse:752.4 nTPM
Rat:612.6 nTPM
Pig:3765.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8719.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4003.8
2828 Female, age 72, unknown 6337.1
2586 Male, age 75, left hemisphere 5634.8
1827 Male, age 72, unknown 4419.6
2019 Male, age 18, unknown 4259.1
1870 Female, age 42, unknown 4136.4
1833 Male, age 53, unknown 3588.7
2666 Male, age 74, left hemisphere 3242.9
1830 Male, age 51, unknown 3102.5
2411 Female, age 72, unknown 2713.2
2219 Male, age 76, both hemispheres 2603.4
Dorsal raphe nucleus
nTPM: 6022.4
2298 Female, age 72, unknown 7770.3
2016 Female, age 72, unknown 7018.0
2047 Male, age 72, unknown 5758.6
1828 Male, age 53, unknown 5668.1
2750 Male, age 76, both hemispheres 3897.1
Inferior colliculus
nTPM: 5170.6
2849 Male, age 72, unknown 5558.6
2097 Female, age 72, unknown 5484.3
1848 Female, age 42, unknown 5193.1
1890 Male, age 53, unknown 4446.6
Median raphe nucleus
nTPM: 5097.5
2220 Male, age 76, midline 5097.5
Periaquaductal grey, anterior
nTPM: 5526.9
1795 Male, age 51, unknown 6575.3
2502 Female, age 75, unknown 5496.4
1947 Male, age 18, unknown 4509.0
Periaquaductal grey, dorsal
nTPM: 6670.8
2850 Male, age 76, both hemispheres 10122.7
1840 Male, age 53, unknown 7360.8
1831 Male, age 72, unknown 5190.9
2464 Female, age 72, unknown 4008.8
Periaquaductal grey, lateral
nTPM: 8719.5
2272 Male, age 74, both hemispheres 9678.3
2140 Male, age 76, both hemispheres 9235.6
2053 Male, age 18, unknown 7244.6
Pretectal area
nTPM: 6436.5
2273 Male, age 74, both hemispheres 13720.5
2407 Male, age 75, both hemispheres 8469.2
1944 Female, age 72, unknown 6758.6
2667 Female, age 75, unknown 6486.1
2224 Female, age 72, unknown 5528.3
1817 Female, age 42, unknown 5527.8
1816 Male, age 51, unknown 5339.6
2825 Male, age 18, unknown 5314.4
1815 Male, age 53, unknown 4880.5
2007 Male, age 72, unknown 4413.4
2316 Male, age 76, right hemisphere 4363.4
Red nucleus
nTPM: 3781.4
2725 Female, age 75, unknown 4709.5
2227 Male, age 72, unknown 4091.8
2769 Male, age 72, unknown 4078.8
2785 Male, age 18, unknown 4031.1
2503 Female, age 72, unknown 4011.4
1821 Female, age 72, unknown 3953.0
1865 Male, age 51, unknown 3926.0
1904 Male, age 53, unknown 3724.8
1954 Female, age 42, unknown 3658.4
2823 Male, age 76, right hemisphere 3501.6
2584 Male, age 75, left hemisphere 3268.9
2588 Male, age 74, left hemisphere 2422.0
Substantia nigra
nTPM: 4306.9
2699 Male, age 18, unknown 6092.2
1916 Female, age 42, unknown 5316.1
1851 Male, age 51, unknown 4896.6
1889 Female, age 72, unknown 4678.2
1941 Male, age 53, unknown 4576.5
2409 Female, age 72, unknown 4213.6
2241 Male, age 72, unknown 3802.5
2590 Female, age 75, unknown 3573.5
2583 Male, age 75, right hemisphere 3213.9
2665 Male, age 74, both hemispheres 2705.5
Superior colliculus
nTPM: 5317.1
2664 Male, age 75, both hemispheres 7449.3
1995 Male, age 72, unknown 6532.3
2087 Female, age 72, unknown 5999.3
2587 Male, age 74, left hemisphere 5647.5
1796 Male, age 53, unknown 5459.2
1913 Female, age 42, unknown 5443.0
2261 Male, age 18, unknown 4934.2
2668 Female, age 75, unknown 4487.0
1839 Male, age 51, unknown 4219.6
1895 Male, age 76, right hemisphere 3000.0
Ventral tegmental area
nTPM: 4764.7
2021 Male, age 53, unknown 5587.9
1942 Male, age 51, unknown 5510.1
1915 Female, age 42, unknown 5194.0
2223 Female, age 72, unknown 4544.1
2218 Male, age 76, both hemispheres 4273.4
2410 Female, age 72, unknown 3478.5

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5667.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5667.1
Samples: 183

Max nTPM: 25775.4
Min nTPM: 1055.8
Std nTPM: 3690.3
Median nTPM: 4567.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 25775.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18728.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 16186.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 15606.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 15324.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 15127.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 13795.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13422.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13361.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 13071.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 13056.7
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 12834.6
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 12511.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 12047.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 11922.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 11325.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 11098.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 11047.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 10949.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 10459.2
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 10450.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 10074.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 9801.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 9784.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 9766.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 9694.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9563.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 9322.6
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 9156.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 8651.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 8502.3
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 8441.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 8400.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 8341.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 8169.7
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 7911.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 7840.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 7792.9
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 7588.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 7511.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 7440.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 7365.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 7132.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 7119.3
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 7063.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 6903.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 6670.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 6652.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 6630.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 6378.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 6365.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 6335.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 6230.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 6139.9
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 6073.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 6016.0
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 5966.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 5962.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 5930.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 5910.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 5898.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 5868.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 5860.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5799.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 5732.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 5652.7
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 5649.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 5642.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 5629.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 5629.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 5593.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 5486.9
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 5463.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 5436.0
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 5405.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5362.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 5215.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 5195.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 5113.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 5089.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 4992.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 4941.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 4870.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 4827.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 4791.6
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 4787.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 4747.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 4687.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 4633.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 4623.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 4584.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 4567.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 4554.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 4484.3
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 4471.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 4442.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 4415.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 4372.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 4345.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 4325.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4324.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 4276.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 4255.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 4193.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 4176.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 4169.7
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 4167.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 4153.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 4127.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 4123.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 4090.9
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 3983.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 3978.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 3953.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 3928.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 3881.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 3810.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 3805.5
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 3799.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 3652.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 3651.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 3631.1
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 3612.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 3608.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 3605.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 3591.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 3580.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 3563.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 3554.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 3513.6
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 3457.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 3429.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 3428.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 3386.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 3376.0
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 3345.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 3344.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 3305.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 3247.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 3218.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 3178.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 3127.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 3124.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3048.7
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 3002.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 2984.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 2842.5
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 2786.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 2754.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2726.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 2720.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2716.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 2691.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 2642.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2601.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 2517.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 2517.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 2492.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 2487.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2466.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2460.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2460.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 2325.7
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 2274.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 2196.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 2179.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 2139.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 2128.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 2077.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 2067.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2062.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1926.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1909.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1823.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1805.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1792.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1782.8
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1665.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1476.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1370.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1343.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1134.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1055.8
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MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3607.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3607.2
FF:10158-103A5 76 years, female 3607.2

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

863.6
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 582.4
Samples: 1

Max nTPM: 582.4
Min nTPM: 582.4
Sample A 582.4
Midbrain
nTPM: 863.6
Samples: 1

Max nTPM: 863.6
Min nTPM: 863.6
Sample A 863.6
Superior colliculi
nTPM: 781.9
Samples: 1

Max nTPM: 781.9
Min nTPM: 781.9
Sample A 781.9

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3765.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3377.6
Samples: 3

Max nTPM: 3652.6
Min nTPM: 3168.3
Sample A Female 3652.6
Sample B Female 3311.9
Sample C Male 3168.3
Midbrain
nTPM: 2980.1
Samples: 3

Max nTPM: 3486.3
Min nTPM: 2188.7
Sample B Female 3265.2
Sample C Male 3486.3
Sample D Male 2188.7
Periaqueductal gray
nTPM: 3582.1
Samples: 3

Max nTPM: 3900.4
Min nTPM: 3166.3
Sample B Female 3679.6
Sample C Male 3900.4
Sample D Male 3166.3
Superior colliculi
nTPM: 3765.6
Samples: 4

Max nTPM: 4972.7
Min nTPM: 2892.3
Sample A Female 4117.4
Sample B Female 4972.7
Sample C Male 3080.0
Sample D Male 2892.3

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

752.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 752.4
Samples: 4

Max nTPM: 787.2
Min nTPM: 724.8
Sample A 787.2
Sample B 724.8
Sample C 764.7
Sample D 732.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

612.6
Rat sample Sample description nTPM
Midbrain
nTPM: 612.6
Samples: 4

Max nTPM: 655.9
Min nTPM: 572.3
Sample A 655.9
Sample A 572.3
Sample A 605.7
Sample A 616.5

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