MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.5 nTPM
HPA Brain:75.5 nTPM
GTEx:54.5 nTPM
FANTOM5:87.8 Scaled Tags Per Million
Pig:55.0 nTPM
Mouse:19.7 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 75.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.4
2586 Male, age 75, left hemisphere 101.1
2828 Female, age 72, unknown 85.7
2666 Male, age 74, left hemisphere 83.0
2219 Male, age 76, both hemispheres 78.2
1827 Male, age 72, unknown 65.4
1870 Female, age 42, unknown 63.9
1830 Male, age 51, unknown 63.8
1833 Male, age 53, unknown 62.1
2019 Male, age 18, unknown 57.2
2411 Female, age 72, unknown 53.3
Dorsal raphe nucleus
nTPM: 62.3
2016 Female, age 72, unknown 72.5
1828 Male, age 53, unknown 67.0
2047 Male, age 72, unknown 62.6
2750 Male, age 76, both hemispheres 60.3
2298 Female, age 72, unknown 49.0
Inferior colliculus
nTPM: 58.4
2849 Male, age 72, unknown 70.1
1848 Female, age 42, unknown 58.6
1890 Male, age 53, unknown 57.6
2097 Female, age 72, unknown 47.2
Median raphe nucleus
nTPM: 75.5
2220 Male, age 76, midline 75.5
Periaquaductal grey, anterior
nTPM: 64.4
1795 Male, age 51, unknown 68.8
2502 Female, age 75, unknown 68.5
1947 Male, age 18, unknown 55.8
Periaquaductal grey, dorsal
nTPM: 70.6
2850 Male, age 76, both hemispheres 97.4
1831 Male, age 72, unknown 71.8
2464 Female, age 72, unknown 59.9
1840 Male, age 53, unknown 53.3
Periaquaductal grey, lateral
nTPM: 73.0
2140 Male, age 76, both hemispheres 83.7
2053 Male, age 18, unknown 67.9
2272 Male, age 74, both hemispheres 67.3
Pretectal area
nTPM: 60.4
2825 Male, age 18, unknown 74.5
2667 Female, age 75, unknown 70.4
2407 Male, age 75, both hemispheres 68.4
1944 Female, age 72, unknown 62.2
1815 Male, age 53, unknown 62.0
1817 Female, age 42, unknown 60.9
1816 Male, age 51, unknown 56.7
2224 Female, age 72, unknown 56.1
2316 Male, age 76, right hemisphere 55.7
2007 Male, age 72, unknown 50.5
2273 Male, age 74, both hemispheres 47.4
Red nucleus
nTPM: 72.7
2227 Male, age 72, unknown 82.2
2769 Male, age 72, unknown 80.9
2588 Male, age 74, left hemisphere 80.1
1865 Male, age 51, unknown 78.9
1954 Female, age 42, unknown 77.4
2584 Male, age 75, left hemisphere 73.9
2503 Female, age 72, unknown 71.7
1821 Female, age 72, unknown 71.0
1904 Male, age 53, unknown 68.3
2785 Male, age 18, unknown 64.4
2823 Male, age 76, right hemisphere 62.6
2725 Female, age 75, unknown 60.7
Substantia nigra
nTPM: 74.4
2699 Male, age 18, unknown 110.7
2665 Male, age 74, both hemispheres 98.0
1941 Male, age 53, unknown 90.6
1916 Female, age 42, unknown 79.2
2583 Male, age 75, right hemisphere 76.5
2590 Female, age 75, unknown 71.5
1851 Male, age 51, unknown 70.5
1889 Female, age 72, unknown 53.4
2409 Female, age 72, unknown 51.0
2241 Male, age 72, unknown 43.0
Superior colliculus
nTPM: 69.7
2664 Male, age 75, both hemispheres 98.8
1995 Male, age 72, unknown 88.1
1839 Male, age 51, unknown 75.5
1913 Female, age 42, unknown 70.0
1796 Male, age 53, unknown 68.4
2087 Female, age 72, unknown 66.5
2668 Female, age 75, unknown 64.7
2587 Male, age 74, left hemisphere 62.0
2261 Male, age 18, unknown 59.6
1895 Male, age 76, right hemisphere 42.9
Ventral tegmental area
nTPM: 67.8
2223 Female, age 72, unknown 79.6
2021 Male, age 53, unknown 73.1
1915 Female, age 42, unknown 68.8
2218 Male, age 76, both hemispheres 65.6
1942 Male, age 51, unknown 61.2
2410 Female, age 72, unknown 58.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.5
Samples: 183

Max nTPM: 156.1
Min nTPM: 26.3
Std nTPM: 19.1
Median nTPM: 51.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 156.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 116.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 114.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 112.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 110.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 105.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 100.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 95.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 91.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 91.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 90.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.8
FF:10158-103A5 76 years, female 87.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.3
Samples: 4

Max nTPM: 57.0
Min nTPM: 35.6
Sample A Female 35.6
Sample B Female 57.0
Sample C Male 39.0
Sample D Male 45.4
Midbrain
nTPM: 41.0
Samples: 4

Max nTPM: 55.3
Min nTPM: 24.6
Sample A Female 55.3
Sample B Female 37.4
Sample C Male 46.5
Sample D Male 24.6
Periaqueductal gray
nTPM: 37.5
Samples: 3

Max nTPM: 41.9
Min nTPM: 33.3
Sample B Female 41.9
Sample C Male 37.3
Sample D Male 33.3
Superior colliculi
nTPM: 54.9
Samples: 4

Max nTPM: 71.6
Min nTPM: 38.8
Sample A Female 38.8
Sample B Female 71.6
Sample C Male 68.0
Sample D Male 41.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.7
Samples: 4

Max nTPM: 21.7
Min nTPM: 17.7
Sample A Male 21.7
Sample B Male 18.8
Sample C Female 20.5
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
77620501 Antisense, RP_070129_03_F06, Mouse strain C57BL/6J (56 days, male) 1.7

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