MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.7 nTPM
HPA Brain:34.1 nTPM
GTEx:54.7 nTPM
FANTOM5:96.0 Scaled Tags Per Million
Pig:36.1 nTPM
Mouse:87.1 nTPM
Allen mouse:4.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.5
2019 Male, age 18, unknown 42.2
2411 Female, age 72, unknown 35.6
1870 Female, age 42, unknown 35.5
1827 Male, age 72, unknown 31.0
2828 Female, age 72, unknown 27.9
1833 Male, age 53, unknown 27.2
2219 Male, age 76, both hemispheres 26.0
1830 Male, age 51, unknown 25.7
2666 Male, age 74, left hemisphere 23.2
2586 Male, age 75, left hemisphere 20.5
Dorsal raphe nucleus
nTPM: 31.8
2298 Female, age 72, unknown 38.7
2750 Male, age 76, both hemispheres 34.6
1828 Male, age 53, unknown 31.2
2047 Male, age 72, unknown 30.3
2016 Female, age 72, unknown 24.4
Inferior colliculus
nTPM: 27.4
2097 Female, age 72, unknown 35.3
1890 Male, age 53, unknown 28.3
1848 Female, age 42, unknown 26.4
2849 Male, age 72, unknown 19.6
Median raphe nucleus
nTPM: 32.0
2220 Male, age 76, midline 32.0
Periaquaductal grey, anterior
nTPM: 28.7
1947 Male, age 18, unknown 29.7
2502 Female, age 75, unknown 28.9
1795 Male, age 51, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 24.9
1840 Male, age 53, unknown 27.1
1831 Male, age 72, unknown 24.8
2464 Female, age 72, unknown 24.4
2850 Male, age 76, both hemispheres 23.5
Periaquaductal grey, lateral
nTPM: 25.8
2272 Male, age 74, both hemispheres 29.4
2053 Male, age 18, unknown 24.5
2140 Male, age 76, both hemispheres 23.3
Pretectal area
nTPM: 33.8
1944 Female, age 72, unknown 43.3
2007 Male, age 72, unknown 43.2
1816 Male, age 51, unknown 42.9
1817 Female, age 42, unknown 42.9
1815 Male, age 53, unknown 35.1
2667 Female, age 75, unknown 32.2
2273 Male, age 74, both hemispheres 31.1
2224 Female, age 72, unknown 30.6
2316 Male, age 76, right hemisphere 26.0
2825 Male, age 18, unknown 22.9
2407 Male, age 75, both hemispheres 21.9
Red nucleus
nTPM: 30.5
1821 Female, age 72, unknown 40.4
2785 Male, age 18, unknown 35.8
1865 Male, age 51, unknown 32.1
1904 Male, age 53, unknown 32.0
2503 Female, age 72, unknown 31.8
1954 Female, age 42, unknown 30.9
2823 Male, age 76, right hemisphere 30.6
2769 Male, age 72, unknown 29.8
2725 Female, age 75, unknown 28.5
2227 Male, age 72, unknown 28.4
2588 Male, age 74, left hemisphere 23.7
2584 Male, age 75, left hemisphere 22.0
Substantia nigra
nTPM: 34.1
1889 Female, age 72, unknown 41.9
1916 Female, age 42, unknown 41.0
1851 Male, age 51, unknown 38.5
2241 Male, age 72, unknown 38.5
2409 Female, age 72, unknown 36.3
1941 Male, age 53, unknown 34.6
2590 Female, age 75, unknown 31.0
2665 Male, age 74, both hemispheres 27.3
2583 Male, age 75, right hemisphere 27.0
2699 Male, age 18, unknown 25.2
Superior colliculus
nTPM: 29.5
2087 Female, age 72, unknown 36.8
2668 Female, age 75, unknown 33.7
2587 Male, age 74, left hemisphere 33.3
2261 Male, age 18, unknown 32.2
1895 Male, age 76, right hemisphere 31.1
1913 Female, age 42, unknown 31.0
1796 Male, age 53, unknown 28.7
1995 Male, age 72, unknown 27.3
1839 Male, age 51, unknown 22.9
2664 Male, age 75, both hemispheres 18.0
Ventral tegmental area
nTPM: 32.0
2410 Female, age 72, unknown 39.3
1915 Female, age 42, unknown 35.6
2218 Male, age 76, both hemispheres 33.5
1942 Male, age 51, unknown 29.4
2223 Female, age 72, unknown 28.7
2021 Male, age 53, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.7
Samples: 183

Max nTPM: 109.1
Min nTPM: 27.7
Std nTPM: 11.2
Median nTPM: 52.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 109.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 85.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 85.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 82.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 82.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 81.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 77.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 77.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 96.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.0
FF:10158-103A5 76 years, female 96.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 41.8
Min nTPM: 27.1
Sample A Female 41.8
Sample B Female 27.1
Sample C Male 38.3
Sample D Male 30.3
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 39.1
Min nTPM: 32.1
Sample A Female 36.8
Sample B Female 32.1
Sample C Male 39.1
Sample D Male 36.3
Periaqueductal gray
nTPM: 28.4
Samples: 3

Max nTPM: 29.3
Min nTPM: 26.7
Sample B Female 29.3
Sample C Male 29.2
Sample D Male 26.7
Superior colliculi
nTPM: 35.5
Samples: 4

Max nTPM: 42.5
Min nTPM: 26.9
Sample A Female 39.7
Sample B Female 26.9
Sample C Male 42.5
Sample D Male 32.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 87.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.2
Samples: 4

Max nTPM: 91.1
Min nTPM: 81.3
Sample A Male 86.1
Sample B Male 91.1
Sample C Female 81.3
Sample D Female 90.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
69568944 Antisense, RP_050426_03_B06, Mouse strain C57BL/6J (56 days, male) 4.1

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