MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.3 nTPM
HPA Brain:59.5 nTPM
GTEx:44.3 nTPM
FANTOM5:0.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.3
2219 Male, age 76, both hemispheres 75.1
2586 Male, age 75, left hemisphere 57.7
1830 Male, age 51, unknown 55.5
2828 Female, age 72, unknown 54.9
1833 Male, age 53, unknown 53.4
1827 Male, age 72, unknown 53.3
2666 Male, age 74, left hemisphere 50.1
2411 Female, age 72, unknown 48.4
2019 Male, age 18, unknown 47.4
1870 Female, age 42, unknown 47.0
Dorsal raphe nucleus
nTPM: 49.1
2047 Male, age 72, unknown 55.8
2750 Male, age 76, both hemispheres 53.7
2016 Female, age 72, unknown 46.2
2298 Female, age 72, unknown 46.1
1828 Male, age 53, unknown 43.4
Inferior colliculus
nTPM: 49.4
2849 Male, age 72, unknown 57.3
1848 Female, age 42, unknown 48.4
1890 Male, age 53, unknown 47.7
2097 Female, age 72, unknown 44.0
Median raphe nucleus
nTPM: 55.9
2220 Male, age 76, midline 55.9
Periaquaductal grey, anterior
nTPM: 50.9
1795 Male, age 51, unknown 55.4
1947 Male, age 18, unknown 53.9
2502 Female, age 75, unknown 43.6
Periaquaductal grey, dorsal
nTPM: 52.7
2464 Female, age 72, unknown 56.4
1831 Male, age 72, unknown 55.7
2850 Male, age 76, both hemispheres 51.2
1840 Male, age 53, unknown 47.4
Periaquaductal grey, lateral
nTPM: 59.5
2140 Male, age 76, both hemispheres 61.6
2272 Male, age 74, both hemispheres 59.6
2053 Male, age 18, unknown 57.2
Pretectal area
nTPM: 53.4
2407 Male, age 75, both hemispheres 64.7
2316 Male, age 76, right hemisphere 62.5
2667 Female, age 75, unknown 56.8
2273 Male, age 74, both hemispheres 55.7
2825 Male, age 18, unknown 55.0
2224 Female, age 72, unknown 54.7
1944 Female, age 72, unknown 52.4
1816 Male, age 51, unknown 51.3
1815 Male, age 53, unknown 50.5
2007 Male, age 72, unknown 43.1
1817 Female, age 42, unknown 40.8
Red nucleus
nTPM: 49.1
2823 Male, age 76, right hemisphere 58.7
2584 Male, age 75, left hemisphere 57.0
2588 Male, age 74, left hemisphere 55.0
1904 Male, age 53, unknown 51.5
1865 Male, age 51, unknown 50.8
2769 Male, age 72, unknown 50.1
2725 Female, age 75, unknown 49.5
2227 Male, age 72, unknown 49.4
2785 Male, age 18, unknown 48.0
1954 Female, age 42, unknown 42.5
2503 Female, age 72, unknown 41.4
1821 Female, age 72, unknown 35.3
Substantia nigra
nTPM: 42.3
2583 Male, age 75, right hemisphere 56.4
2590 Female, age 75, unknown 51.2
2665 Male, age 74, both hemispheres 45.0
1941 Male, age 53, unknown 44.0
2699 Male, age 18, unknown 43.6
1889 Female, age 72, unknown 39.0
2409 Female, age 72, unknown 39.0
1851 Male, age 51, unknown 37.3
2241 Male, age 72, unknown 35.7
1916 Female, age 42, unknown 31.6
Superior colliculus
nTPM: 52.6
2087 Female, age 72, unknown 59.2
1913 Female, age 42, unknown 57.4
2664 Male, age 75, both hemispheres 57.4
2261 Male, age 18, unknown 54.4
1895 Male, age 76, right hemisphere 53.9
1796 Male, age 53, unknown 51.5
1995 Male, age 72, unknown 51.4
1839 Male, age 51, unknown 51.0
2668 Female, age 75, unknown 45.5
2587 Male, age 74, left hemisphere 44.3
Ventral tegmental area
nTPM: 44.1
2021 Male, age 53, unknown 54.3
2218 Male, age 76, both hemispheres 44.6
1942 Male, age 51, unknown 44.1
2223 Female, age 72, unknown 42.4
2410 Female, age 72, unknown 40.6
1915 Female, age 42, unknown 38.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.3
Samples: 183

Max nTPM: 110.4
Min nTPM: 12.3
Std nTPM: 15.7
Median nTPM: 41.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 110.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 99.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 92.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 91.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 82.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 81.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 72.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 69.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 68.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 68.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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