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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2558.1 nTPM
GTEx:2558.1 nTPM
FANTOM5:25.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA047252
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2558.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2558.1
Samples: 170

Max nTPM: 7613.9
Min nTPM: 1463.8
Std nTPM: 811.3
Median nTPM: 2402.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 7613.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 5815.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 5752.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 5472.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4116.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4058.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 4056.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3947.1
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 3774.7
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 3699.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3678.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3576.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3565.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3538.7
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 3516.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3468.6
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 3452.8
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 3432.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 3427.5
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3379.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 3367.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3363.9
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 3324.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 3323.1
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 3298.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 3266.5
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3233.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 3193.3
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 3182.4
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 3145.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 3141.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 3128.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3044.1
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 2996.8
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2965.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2954.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2941.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2921.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2910.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2905.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2847.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2824.8
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2824.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2823.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2785.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2766.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2755.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2752.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2735.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2734.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2720.9
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 2712.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2699.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2652.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2651.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2645.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2636.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2634.0
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2628.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2617.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2617.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2612.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2609.7
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2584.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2582.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2539.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2527.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2520.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2511.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2508.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2503.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2487.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2466.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2461.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 2458.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2455.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2452.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2441.3
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2433.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2429.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2422.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2420.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2415.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2409.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2409.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2396.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2390.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2385.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2380.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2369.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2362.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2345.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2342.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2328.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2324.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2313.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2313.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2306.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2302.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2301.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2295.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2275.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2248.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 2233.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2218.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2218.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2216.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2211.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2211.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2182.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2165.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2162.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2138.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2138.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2133.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2117.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2092.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2084.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2078.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2074.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2070.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2067.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2038.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2033.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2033.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2032.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 2028.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2025.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 2025.1
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2024.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2022.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2015.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2013.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2002.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 2002.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1986.9
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1974.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1969.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1968.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1958.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1937.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1937.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1912.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1881.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1880.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1877.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1853.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1851.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1849.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1839.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1819.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1816.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1811.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1804.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1804.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1795.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1790.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1788.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1786.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1783.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1751.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1738.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1721.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1697.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1684.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1663.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1617.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1571.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1515.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1463.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 25.8
FF:10204-103F6 68 years, female 25.8

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