MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:123.6 nTPM
HPA Brain:145.9 nTPM
GTEx:123.6 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:88.0 nTPM
Mouse:198.1 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 145.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.3
1827 Male, age 72, unknown 163.8
2586 Male, age 75, left hemisphere 153.9
2828 Female, age 72, unknown 150.1
2019 Male, age 18, unknown 132.7
2411 Female, age 72, unknown 125.2
1870 Female, age 42, unknown 108.0
1833 Male, age 53, unknown 100.3
1830 Male, age 51, unknown 98.8
2666 Male, age 74, left hemisphere 98.1
2219 Male, age 76, both hemispheres 81.8
Dorsal raphe nucleus
nTPM: 127.1
2298 Female, age 72, unknown 145.7
2047 Male, age 72, unknown 129.7
2016 Female, age 72, unknown 125.0
1828 Male, age 53, unknown 118.6
2750 Male, age 76, both hemispheres 116.6
Inferior colliculus
nTPM: 110.5
1848 Female, age 42, unknown 118.1
2097 Female, age 72, unknown 111.3
2849 Male, age 72, unknown 110.7
1890 Male, age 53, unknown 102.0
Median raphe nucleus
nTPM: 137.6
2220 Male, age 76, midline 137.6
Periaquaductal grey, anterior
nTPM: 132.4
1795 Male, age 51, unknown 145.2
2502 Female, age 75, unknown 141.3
1947 Male, age 18, unknown 110.6
Periaquaductal grey, dorsal
nTPM: 131.3
2850 Male, age 76, both hemispheres 142.9
1840 Male, age 53, unknown 137.9
2464 Female, age 72, unknown 131.8
1831 Male, age 72, unknown 112.5
Periaquaductal grey, lateral
nTPM: 125.2
2140 Male, age 76, both hemispheres 142.0
2053 Male, age 18, unknown 129.8
2272 Male, age 74, both hemispheres 103.7
Pretectal area
nTPM: 145.9
1816 Male, age 51, unknown 189.0
1817 Female, age 42, unknown 174.6
1944 Female, age 72, unknown 170.0
2007 Male, age 72, unknown 167.4
1815 Male, age 53, unknown 161.4
2667 Female, age 75, unknown 142.9
2273 Male, age 74, both hemispheres 126.7
2224 Female, age 72, unknown 126.4
2825 Male, age 18, unknown 117.4
2316 Male, age 76, right hemisphere 115.7
2407 Male, age 75, both hemispheres 113.3
Red nucleus
nTPM: 107.7
2588 Male, age 74, left hemisphere 125.2
2785 Male, age 18, unknown 123.5
2503 Female, age 72, unknown 121.2
1821 Female, age 72, unknown 117.0
1954 Female, age 42, unknown 106.5
1865 Male, age 51, unknown 105.1
2725 Female, age 75, unknown 102.0
2769 Male, age 72, unknown 101.8
1904 Male, age 53, unknown 101.2
2823 Male, age 76, right hemisphere 99.5
2227 Male, age 72, unknown 95.8
2584 Male, age 75, left hemisphere 93.9
Substantia nigra
nTPM: 116.3
2665 Male, age 74, both hemispheres 136.1
1889 Female, age 72, unknown 133.1
1941 Male, age 53, unknown 123.2
2590 Female, age 75, unknown 121.1
2409 Female, age 72, unknown 114.8
1851 Male, age 51, unknown 114.0
2583 Male, age 75, right hemisphere 114.0
1916 Female, age 42, unknown 110.2
2241 Male, age 72, unknown 101.7
2699 Male, age 18, unknown 95.3
Superior colliculus
nTPM: 126.6
2261 Male, age 18, unknown 163.2
2087 Female, age 72, unknown 153.7
2664 Male, age 75, both hemispheres 147.5
1796 Male, age 53, unknown 141.7
1995 Male, age 72, unknown 117.3
2668 Female, age 75, unknown 117.1
1913 Female, age 42, unknown 116.8
1839 Male, age 51, unknown 106.9
2587 Male, age 74, left hemisphere 104.5
1895 Male, age 76, right hemisphere 97.5
Ventral tegmental area
nTPM: 115.5
2410 Female, age 72, unknown 125.0
2223 Female, age 72, unknown 119.8
2021 Male, age 53, unknown 116.3
1942 Male, age 51, unknown 114.7
1915 Female, age 42, unknown 109.1
2218 Male, age 76, both hemispheres 107.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 123.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.6
Samples: 183

Max nTPM: 349.1
Min nTPM: 33.6
Std nTPM: 49.9
Median nTPM: 114.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 349.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 310.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 298.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 294.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 282.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 267.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 267.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 235.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 207.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 206.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 201.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.9
FF:10158-103A5 76 years, female 91.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 88.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.9
Samples: 4

Max nTPM: 94.3
Min nTPM: 60.1
Sample A Female 94.3
Sample B Female 60.1
Sample C Male 73.1
Sample D Male 72.1
Midbrain
nTPM: 88.1
Samples: 4

Max nTPM: 144.1
Min nTPM: 57.1
Sample A Female 144.1
Sample B Female 78.5
Sample C Male 72.5
Sample D Male 57.1
Periaqueductal gray
nTPM: 58.4
Samples: 3

Max nTPM: 63.2
Min nTPM: 51.3
Sample B Female 63.2
Sample C Male 60.7
Sample D Male 51.3
Superior colliculi
nTPM: 88.0
Samples: 4

Max nTPM: 109.5
Min nTPM: 76.3
Sample A Female 87.3
Sample B Female 78.9
Sample C Male 109.5
Sample D Male 76.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 198.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 198.2
Samples: 4

Max nTPM: 209.8
Min nTPM: 186.7
Sample A Male 209.8
Sample B Male 186.7
Sample C Female 197.9
Sample D Female 198.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
69015284 Antisense, RP_050310_02_F07, Mouse strain C57BL/6J (56 days, male) 2.3
70436739 Antisense, RP_050310_02_F07, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo