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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPL5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:490.5 nTPM
FANTOM5:485.9 Scaled Tags Per Million
Pig:0.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043717
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

490.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 490.5
Samples: 300

Max nTPM: 1079.5
Min nTPM: 312.0
Std nTPM: 117.8
Median nTPM: 474.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1079.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1047.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 988.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 960.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 887.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 840.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 819.5
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 806.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 796.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 769.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 751.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 724.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 723.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 723.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 717.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 716.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 716.1
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 711.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 709.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 703.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 696.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 694.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 691.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 675.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 670.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 647.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 636.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 631.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 627.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 620.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 609.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 604.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 600.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 598.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 594.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 593.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 593.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 590.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 589.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 588.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 586.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 584.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 584.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 584.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 579.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 577.6
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 577.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 573.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 570.0
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 569.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 569.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 564.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 562.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 559.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 559.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 557.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 557.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 557.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 555.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 554.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 551.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 550.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 550.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 547.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 546.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 545.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 544.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 543.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 543.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 543.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 542.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 535.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 534.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 533.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 532.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 532.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 532.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 531.1
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 531.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 530.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 529.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 528.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 527.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 527.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 527.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 527.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 526.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 526.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 526.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 526.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 526.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 523.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 521.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 519.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 518.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 517.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 517.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 517.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 513.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 509.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 508.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 508.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 507.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 507.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 506.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 505.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 504.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 502.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 502.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 501.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 501.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 500.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 500.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 499.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 499.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 499.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 498.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 497.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 492.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 492.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 492.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 491.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 491.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 491.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 489.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 488.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 488.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 487.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 487.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 486.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 485.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 484.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 483.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 483.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 482.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 481.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 480.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 480.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 479.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 479.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 478.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 478.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 478.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 477.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 477.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 477.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 477.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 477.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 476.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 474.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 473.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 473.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 469.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 469.4
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 468.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 464.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 462.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 462.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 460.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 460.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 458.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 458.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 458.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 457.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 456.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 456.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 456.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 455.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 455.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 454.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 454.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 453.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 452.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 451.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 451.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 451.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 449.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 448.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 447.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 445.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 445.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 444.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 444.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 444.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 443.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 443.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 441.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 441.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 441.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 439.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 439.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 437.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 436.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 435.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 433.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 433.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 432.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 432.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 432.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 431.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 431.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 430.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 430.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 428.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 428.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 427.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 424.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 423.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 423.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 423.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 421.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 421.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 421.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 421.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 421.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 420.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 420.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 417.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 416.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 416.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 416.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 415.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 414.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 414.5
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 414.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 413.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 412.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 412.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 412.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 411.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 410.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 409.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 408.3
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 407.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 407.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 407.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 403.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 403.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 403.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 401.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 400.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 398.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 397.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 396.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 395.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 393.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 393.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 392.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 391.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 390.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 388.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 388.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 388.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 386.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 385.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 385.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 384.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 383.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 382.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 381.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 379.5
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 377.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 376.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 375.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 374.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 374.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 374.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 373.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 371.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 368.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 366.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 364.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 364.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 363.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 363.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 363.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 361.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 361.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 361.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 359.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 358.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 357.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 355.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 354.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 353.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 353.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 350.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 350.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 349.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 349.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 347.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 345.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 343.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 338.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 337.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 331.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 327.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 327.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 324.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 312.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

485.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 485.9
FF:10164-103B2 76 years, female 485.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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