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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:924.5 nTPM
HPA:688.5 nTPM
GTEx:924.5 nTPM
FANTOM5:1253.2 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043717
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

688.5
overview
Male, age 65
Small intestine sample 232
nTPM: 879.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 665.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 603.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 605.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

924.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 924.5
Samples: 207

Max nTPM: 1810.8
Min nTPM: 424.1
Std nTPM: 276.7
Median nTPM: 903.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1810.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1728.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1686.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1638.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1592.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1563.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1561.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1500.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1453.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1443.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1441.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1431.2
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 1428.4
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 1426.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1415.4
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 1379.6
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 1357.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1340.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 1338.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1323.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1308.6
GTEX-1192X-2526-SM-59868 50-59 years, male 1300.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1299.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1271.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1248.7
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1229.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1224.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1221.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1211.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1203.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1184.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1175.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1174.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1170.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1170.5
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1165.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1159.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1153.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1149.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1144.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1140.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1136.5
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1131.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1130.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1126.4
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 1123.7
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1120.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1117.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1096.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1093.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1088.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1081.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1076.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1073.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1070.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1069.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1068.3
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1066.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1060.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1057.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1056.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1055.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1054.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1048.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1044.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1041.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1034.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1032.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1030.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1024.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1013.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1002.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 999.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 998.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 995.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 993.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 988.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 988.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 983.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 981.1
GTEX-178AV-1226-SM-GOR11 40-49 years, male 980.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 973.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 971.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 961.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 958.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 954.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 951.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 949.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 944.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 942.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 941.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 941.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 941.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 937.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 934.2
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 930.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 916.3
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 913.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 912.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 910.3
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 908.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 906.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 904.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 903.1
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 900.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 897.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 896.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 895.9
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 894.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 890.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 888.0
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 879.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 878.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 875.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 873.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 865.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 859.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 859.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 850.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 844.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 841.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 839.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 830.9
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 828.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 823.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 821.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 819.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 818.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 808.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 798.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 797.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 791.4
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 789.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 788.3
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 782.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 781.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 780.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 773.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 769.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 768.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 766.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 762.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 761.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 758.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 757.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 757.1
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 745.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 738.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 736.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 736.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 734.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 732.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 728.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 723.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 719.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 718.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 710.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 701.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 700.6
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 696.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 686.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 678.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 674.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 671.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 667.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 664.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 662.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 659.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 656.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 655.2
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 651.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 647.9
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 644.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 642.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 641.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 641.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 639.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 635.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 634.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 633.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 633.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 622.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 622.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 619.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 612.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 609.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 597.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 574.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 574.3
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 567.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 567.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 540.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 539.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 535.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 529.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 525.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 515.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 515.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 513.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 511.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 510.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 505.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 483.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 479.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 475.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 474.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 424.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1253.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1253.2
FF:10024-101D6 15,40,85 years, mixed 1253.2

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