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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1257.7 nTPM
GTEx:1257.7 nTPM
FANTOM5:1907.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043717
Squamous epithelial cells High


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1257.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1257.7
Samples: 170

Max nTPM: 2934.0
Min nTPM: 729.9
Std nTPM: 310.7
Median nTPM: 1211.2
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 2934.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2506.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2478.5
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2378.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1917.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1829.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1758.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1674.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1649.1
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1644.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1640.0
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1633.1
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1618.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1609.3
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1605.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1600.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1591.7
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1584.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1571.1
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1557.4
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1555.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1553.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1549.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1547.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1538.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1516.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1508.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1501.4
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1500.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1491.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1487.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1479.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1478.2
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1477.1
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1461.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1445.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1438.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1430.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1426.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1423.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1415.7
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1415.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1414.7
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1413.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1412.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1402.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1396.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1391.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1384.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1381.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1378.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1363.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1362.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1357.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1334.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1334.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1334.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1332.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1326.0
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1325.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1324.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1322.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1317.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1298.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1294.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1293.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1286.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1282.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1273.1
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1261.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1258.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1256.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1256.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1252.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1252.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1247.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1231.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1230.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1226.9
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1226.5
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1219.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1217.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1213.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1212.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1211.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1211.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1205.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1201.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1198.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1190.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1190.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1187.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1186.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1185.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1179.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1179.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1168.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 1168.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1167.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1165.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1160.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1153.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1153.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1149.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1145.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1135.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1127.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1127.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1120.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1112.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1110.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1102.9
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1102.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1101.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1099.2
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1097.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1092.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1090.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1085.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1081.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1080.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1079.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1073.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1068.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1064.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1062.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1060.8
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1059.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1051.3
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1043.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1042.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 1041.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1041.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1040.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1019.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1015.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1014.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1013.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1011.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 999.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 992.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 985.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 983.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 981.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 966.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 965.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 956.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 947.8
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 946.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 943.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 936.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 935.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 934.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 927.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 926.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 919.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 919.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 916.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 896.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 894.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 888.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 888.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 882.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 857.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 857.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 847.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 838.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 807.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 784.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 729.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1907.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1907.8
FF:10204-103F6 68 years, female 1907.8

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