MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.1 nTPM
HPA Brain:33.7 nTPM
GTEx:76.1 nTPM
FANTOM5:247.1 Scaled Tags Per Million
Pig:27.5 nTPM
Mouse:19.2 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.1
2019 Male, age 18, unknown 34.9
1870 Female, age 42, unknown 32.7
2411 Female, age 72, unknown 25.5
1830 Male, age 51, unknown 24.8
2828 Female, age 72, unknown 24.7
1833 Male, age 53, unknown 24.5
2666 Male, age 74, left hemisphere 21.8
1827 Male, age 72, unknown 17.5
2219 Male, age 76, both hemispheres 8.3
2586 Male, age 75, left hemisphere 6.0
Dorsal raphe nucleus
nTPM: 31.0
2298 Female, age 72, unknown 52.8
2016 Female, age 72, unknown 32.9
1828 Male, age 53, unknown 26.0
2750 Male, age 76, both hemispheres 23.6
2047 Male, age 72, unknown 20.0
Inferior colliculus
nTPM: 25.2
2097 Female, age 72, unknown 34.8
1890 Male, age 53, unknown 26.7
1848 Female, age 42, unknown 23.8
2849 Male, age 72, unknown 15.7
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Periaquaductal grey, anterior
nTPM: 28.5
2502 Female, age 75, unknown 38.5
1795 Male, age 51, unknown 24.7
1947 Male, age 18, unknown 22.2
Periaquaductal grey, dorsal
nTPM: 27.7
1831 Male, age 72, unknown 35.3
2850 Male, age 76, both hemispheres 33.1
2464 Female, age 72, unknown 25.2
1840 Male, age 53, unknown 17.4
Periaquaductal grey, lateral
nTPM: 33.7
2272 Male, age 74, both hemispheres 39.7
2140 Male, age 76, both hemispheres 32.1
2053 Male, age 18, unknown 29.5
Pretectal area
nTPM: 27.8
2224 Female, age 72, unknown 46.8
2273 Male, age 74, both hemispheres 34.1
2316 Male, age 76, right hemisphere 33.9
1817 Female, age 42, unknown 33.2
2007 Male, age 72, unknown 26.6
2667 Female, age 75, unknown 26.5
1815 Male, age 53, unknown 24.1
1944 Female, age 72, unknown 23.9
2407 Male, age 75, both hemispheres 20.0
2825 Male, age 18, unknown 18.5
1816 Male, age 51, unknown 18.3
Red nucleus
nTPM: 29.9
1954 Female, age 42, unknown 43.0
1821 Female, age 72, unknown 36.8
1865 Male, age 51, unknown 34.4
1904 Male, age 53, unknown 34.3
2785 Male, age 18, unknown 33.2
2769 Male, age 72, unknown 33.1
2227 Male, age 72, unknown 33.0
2503 Female, age 72, unknown 28.2
2725 Female, age 75, unknown 25.1
2823 Male, age 76, right hemisphere 24.5
2588 Male, age 74, left hemisphere 20.2
2584 Male, age 75, left hemisphere 13.0
Substantia nigra
nTPM: 29.1
2665 Male, age 74, both hemispheres 51.2
1851 Male, age 51, unknown 34.1
2409 Female, age 72, unknown 33.9
2241 Male, age 72, unknown 31.4
2699 Male, age 18, unknown 28.1
2590 Female, age 75, unknown 27.0
1916 Female, age 42, unknown 24.4
1889 Female, age 72, unknown 23.3
1941 Male, age 53, unknown 22.3
2583 Male, age 75, right hemisphere 15.0
Superior colliculus
nTPM: 24.8
2587 Male, age 74, left hemisphere 38.6
1913 Female, age 42, unknown 31.4
1995 Male, age 72, unknown 30.3
1796 Male, age 53, unknown 30.2
2087 Female, age 72, unknown 26.2
2261 Male, age 18, unknown 23.1
1839 Male, age 51, unknown 21.2
2668 Female, age 75, unknown 20.1
1895 Male, age 76, right hemisphere 16.3
2664 Male, age 75, both hemispheres 10.8
Ventral tegmental area
nTPM: 30.7
2021 Male, age 53, unknown 35.1
1915 Female, age 42, unknown 34.5
2218 Male, age 76, both hemispheres 30.4
1942 Male, age 51, unknown 29.9
2223 Female, age 72, unknown 28.1
2410 Female, age 72, unknown 26.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 76.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.1
Samples: 183

Max nTPM: 387.4
Min nTPM: 9.8
Std nTPM: 54.2
Median nTPM: 59.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 387.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 353.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 241.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 229.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 205.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 200.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 187.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 181.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 174.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 173.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 154.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 247.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 247.1
FF:10158-103A5 76 years, female 247.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.1
Samples: 4

Max nTPM: 32.5
Min nTPM: 14.8
Sample A Female 14.8
Sample B Female 32.5
Sample C Male 25.0
Sample D Male 16.2
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 23.8
Min nTPM: 12.9
Sample A Female 13.7
Sample B Female 23.8
Sample C Male 12.9
Sample D Male 14.3
Periaqueductal gray
nTPM: 27.5
Samples: 3

Max nTPM: 39.4
Min nTPM: 18.3
Sample B Female 18.3
Sample C Male 39.4
Sample D Male 24.7
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.1
Sample A Female 17.7
Sample B Female 19.3
Sample C Male 19.2
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 16.1
Sample A Male 23.4
Sample B Male 16.1
Sample C Female 18.1
Sample D Female 19.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68191294 Antisense, RP_041123_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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