MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.1 nTPM
HPA Brain:27.2 nTPM
GTEx:23.1 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:43.4 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2411 Female, age 72, unknown 25.8
2019 Male, age 18, unknown 25.3
1870 Female, age 42, unknown 24.2
1827 Male, age 72, unknown 24.1
1833 Male, age 53, unknown 23.0
2586 Male, age 75, left hemisphere 22.5
2219 Male, age 76, both hemispheres 22.4
2666 Male, age 74, left hemisphere 22.2
1830 Male, age 51, unknown 21.5
2828 Female, age 72, unknown 19.9
Dorsal raphe nucleus
nTPM: 24.4
1828 Male, age 53, unknown 26.3
2298 Female, age 72, unknown 26.2
2750 Male, age 76, both hemispheres 23.9
2047 Male, age 72, unknown 23.5
2016 Female, age 72, unknown 22.3
Inferior colliculus
nTPM: 19.9
2097 Female, age 72, unknown 25.2
1890 Male, age 53, unknown 19.6
1848 Female, age 42, unknown 18.3
2849 Male, age 72, unknown 16.4
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Periaquaductal grey, anterior
nTPM: 25.2
1947 Male, age 18, unknown 28.5
2502 Female, age 75, unknown 25.4
1795 Male, age 51, unknown 21.6
Periaquaductal grey, dorsal
nTPM: 19.3
2464 Female, age 72, unknown 20.4
1831 Male, age 72, unknown 19.9
1840 Male, age 53, unknown 18.8
2850 Male, age 76, both hemispheres 18.1
Periaquaductal grey, lateral
nTPM: 18.4
2053 Male, age 18, unknown 19.4
2140 Male, age 76, both hemispheres 18.0
2272 Male, age 74, both hemispheres 17.7
Pretectal area
nTPM: 22.7
2007 Male, age 72, unknown 25.7
1816 Male, age 51, unknown 25.2
1815 Male, age 53, unknown 24.3
1817 Female, age 42, unknown 24.3
2224 Female, age 72, unknown 23.8
1944 Female, age 72, unknown 23.6
2273 Male, age 74, both hemispheres 22.5
2316 Male, age 76, right hemisphere 21.6
2667 Female, age 75, unknown 20.9
2825 Male, age 18, unknown 19.7
2407 Male, age 75, both hemispheres 17.8
Red nucleus
nTPM: 21.2
1821 Female, age 72, unknown 25.9
2503 Female, age 72, unknown 24.7
2725 Female, age 75, unknown 22.5
2588 Male, age 74, left hemisphere 22.3
1865 Male, age 51, unknown 21.8
2823 Male, age 76, right hemisphere 20.7
1954 Female, age 42, unknown 20.0
2769 Male, age 72, unknown 19.7
2785 Male, age 18, unknown 19.6
2227 Male, age 72, unknown 19.5
1904 Male, age 53, unknown 19.2
2584 Male, age 75, left hemisphere 18.3
Substantia nigra
nTPM: 27.2
1916 Female, age 42, unknown 33.9
2241 Male, age 72, unknown 33.9
1941 Male, age 53, unknown 32.2
1851 Male, age 51, unknown 29.9
1889 Female, age 72, unknown 25.4
2409 Female, age 72, unknown 25.3
2699 Male, age 18, unknown 24.5
2590 Female, age 75, unknown 23.3
2665 Male, age 74, both hemispheres 22.6
2583 Male, age 75, right hemisphere 21.3
Superior colliculus
nTPM: 22.3
2668 Female, age 75, unknown 25.5
2587 Male, age 74, left hemisphere 24.1
2087 Female, age 72, unknown 23.6
2261 Male, age 18, unknown 22.8
1913 Female, age 42, unknown 22.4
1839 Male, age 51, unknown 21.7
1796 Male, age 53, unknown 21.1
1895 Male, age 76, right hemisphere 20.8
2664 Male, age 75, both hemispheres 20.8
1995 Male, age 72, unknown 20.5
Ventral tegmental area
nTPM: 24.8
1915 Female, age 42, unknown 29.1
2410 Female, age 72, unknown 24.9
2218 Male, age 76, both hemispheres 24.7
2223 Female, age 72, unknown 24.6
1942 Male, age 51, unknown 24.5
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.1
Samples: 183

Max nTPM: 34.4
Min nTPM: 15.7
Std nTPM: 3.4
Median nTPM: 23.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 34.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 33.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 31.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 31.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 30.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 30.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 30.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 29.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.1
FF:10158-103A5 76 years, female 67.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.7
Samples: 4

Max nTPM: 64.0
Min nTPM: 40.4
Sample A Female 64.0
Sample B Female 46.2
Sample C Male 52.0
Sample D Male 40.4
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 52.6
Min nTPM: 40.2
Sample A Female 52.6
Sample B Female 46.5
Sample C Male 40.2
Sample D Male 44.4
Periaqueductal gray
nTPM: 41.7
Samples: 3

Max nTPM: 44.5
Min nTPM: 36.3
Sample B Female 36.3
Sample C Male 44.5
Sample D Male 44.2
Superior colliculi
nTPM: 46.1
Samples: 4

Max nTPM: 55.5
Min nTPM: 36.8
Sample A Female 55.5
Sample B Female 36.8
Sample C Male 47.3
Sample D Male 44.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.4
Samples: 4

Max nTPM: 45.2
Min nTPM: 39.6
Sample A Male 44.8
Sample B Male 45.2
Sample C Female 44.1
Sample D Female 39.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
68442901 Antisense, RP_050111_01_A02, Mouse strain C57BL/6J (56 days, male) 1.7

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