A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.6
nTPM
Monaco:
26.2
nTPM
Schmiedel:
42.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.6
HPA sample
nTPM
NK-cell nTPM: 7.6
Samples: 6
Max nTPM: 12.3
Min nTPM: 4.6
P10809_1013
4.6
P10809_1033
10.7
P10809_1052
5.3
P10809_1071
8.1
P10809_1093
12.3
P10809_1103
4.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.2
Monaco sample
nTPM
NK-cell nTPM: 26.2
Samples: 4
Max nTPM: 30.4
Min nTPM: 23.3
RHH5316_R3683
26.2
RHH5224_R3596
24.9
RHH5253_R3625
30.4
RHH5282_R3654
23.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.2
Schmiedel sample id
TPM
NK-cell TPM: 42.2
Samples: 90
Max TPM: 61.9
Min TPM: 20.5
NK_1
61.9
NK_2
58.5
NK_3
56.2
NK_4
56.0
NK_5
55.8
NK_6
55.3
NK_7
55.1
NK_8
54.9
NK_9
54.5
NK_10
54.5
NK_11
54.5
NK_12
54.1
NK_13
53.2
NK_14
53.1
NK_15
52.7
NK_16
52.6
NK_17
52.5
NK_18
52.2
NK_19
51.6
NK_20
50.8
NK_21
50.0
NK_22
50.0
NK_23
49.2
NK_24
48.8
NK_25
48.7
NK_26
48.6
NK_27
48.5
NK_28
48.4
NK_29
47.5
NK_30
47.4
NK_31
47.3
NK_32
47.2
NK_33
46.9
NK_34
46.8
NK_35
46.6
NK_36
46.0
NK_37
45.5
NK_38
44.0
NK_39
43.9
NK_40
43.8
NK_41
43.6
NK_42
42.7
NK_43
42.7
NK_44
42.1
NK_45
41.9
NK_46
41.6
NK_47
41.3
NK_48
41.1
NK_49
40.6
NK_50
40.5
NK_51
40.4
NK_52
39.9
NK_53
39.7
NK_54
39.1
NK_55
38.9
NK_56
38.8
NK_57
38.5
NK_58
37.8
NK_59
37.5
NK_60
37.4
NK_61
37.3
NK_62
37.3
NK_63
37.2
NK_64
37.0
NK_65
36.3
NK_66
36.1
NK_67
35.9
NK_68
35.5
NK_69
34.9
NK_70
34.9
NK_71
33.9
NK_72
33.7
NK_73
33.6
NK_74
33.4
NK_75
32.7
NK_76
32.2
NK_77
31.5
NK_78
31.4
NK_79
30.2
NK_80
30.1
NK_81
29.7
NK_82
29.6
NK_83
28.9
NK_84
28.3
NK_85
27.1
NK_86
27.0
NK_87
26.3
NK_88
26.3
NK_89
24.2
NK_90
20.5
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