A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.5
nTPM
Monaco:
24.9
nTPM
Schmiedel:
27.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.5
HPA sample
nTPM
Classical monocyte nTPM: 4.4
Samples: 6
Max nTPM: 5.5
Min nTPM: 3.8
P10809_1003
3.8
P10809_1020
5.5
P10809_1039
4.0
P10809_1058
4.5
P10809_1080
4.6
P10809_1107
4.0
Intermediate monocyte nTPM: 7.7
Samples: 6
Max nTPM: 21.0
Min nTPM: 2.9
P10809_1004
7.3
P10809_1023
2.9
P10809_1042
6.5
P10809_1061
21.0
P10809_1081
4.6
P10809_1108
3.7
Non-classical monocyte nTPM: 12.5
Samples: 5
Max nTPM: 43.7
Min nTPM: 3.6
P10809_1005
5.9
P10809_1053
5.5
P10809_1072
43.7
P10809_1082
3.6
P10809_1109
3.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.9
Monaco sample
nTPM
Classical monocyte nTPM: 17.5
Samples: 4
Max nTPM: 19.9
Min nTPM: 14.0
RHH5313_R3680
14.0
RHH5221_R3593
19.9
RHH5250_R3622
19.4
RHH5279_R3651
16.5
Intermediate monocyte nTPM: 18.1
Samples: 4
Max nTPM: 20.3
Min nTPM: 14.6
RHH5314_R3681
18.2
RHH5222_R3594
20.3
RHH5251_R3623
14.6
RHH5280_R3652
19.3
Non-classical monocyte nTPM: 24.9
Samples: 4
Max nTPM: 27.3
Min nTPM: 22.6
RHH5315_R3682
25.5
RHH5223_R3595
27.3
RHH5252_R3624
24.1
RHH5281_R3653
22.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.2
Schmiedel sample id
TPM
Classical monocyte TPM: 21.9
Samples: 91
Max TPM: 33.3
Min TPM: 14.0
MONOCYTES_1
33.3
MONOCYTES_2
29.1
MONOCYTES_3
28.9
MONOCYTES_4
27.7
MONOCYTES_5
27.4
MONOCYTES_6
27.3
MONOCYTES_7
26.9
MONOCYTES_8
26.2
MONOCYTES_9
25.9
MONOCYTES_10
25.8
MONOCYTES_11
25.7
MONOCYTES_12
25.6
MONOCYTES_13
25.4
MONOCYTES_14
25.2
MONOCYTES_15
25.1
MONOCYTES_16
25.1
MONOCYTES_17
25.0
MONOCYTES_18
24.8
MONOCYTES_19
24.5
MONOCYTES_20
24.3
MONOCYTES_21
24.1
MONOCYTES_22
24.0
MONOCYTES_23
23.8
MONOCYTES_24
23.5
MONOCYTES_25
23.5
MONOCYTES_26
23.3
MONOCYTES_27
23.3
MONOCYTES_28
23.3
MONOCYTES_29
23.1
MONOCYTES_30
23.0
MONOCYTES_31
23.0
MONOCYTES_32
23.0
MONOCYTES_33
22.9
MONOCYTES_34
22.9
MONOCYTES_35
22.8
MONOCYTES_36
22.7
MONOCYTES_37
22.7
MONOCYTES_38
22.5
MONOCYTES_39
22.5
MONOCYTES_40
22.4
MONOCYTES_41
22.4
MONOCYTES_42
22.3
MONOCYTES_43
22.3
MONOCYTES_44
22.3
MONOCYTES_45
22.0
MONOCYTES_46
22.0
MONOCYTES_47
22.0
MONOCYTES_48
21.8
MONOCYTES_49
21.8
MONOCYTES_50
21.7
MONOCYTES_51
21.6
MONOCYTES_52
21.6
MONOCYTES_53
21.3
MONOCYTES_54
21.3
MONOCYTES_55
21.2
MONOCYTES_56
21.0
MONOCYTES_57
20.9
MONOCYTES_58
20.9
MONOCYTES_59
20.8
MONOCYTES_60
20.8
MONOCYTES_61
20.7
MONOCYTES_62
20.7
MONOCYTES_63
20.6
MONOCYTES_64
20.6
MONOCYTES_65
20.5
MONOCYTES_66
20.5
MONOCYTES_67
20.4
MONOCYTES_68
20.4
MONOCYTES_69
20.3
MONOCYTES_70
20.3
MONOCYTES_71
19.5
MONOCYTES_72
19.4
MONOCYTES_73
19.2
MONOCYTES_74
18.8
MONOCYTES_75
18.7
MONOCYTES_76
18.2
MONOCYTES_77
18.1
MONOCYTES_78
17.8
MONOCYTES_79
17.7
MONOCYTES_80
17.6
MONOCYTES_81
17.2
MONOCYTES_82
17.1
MONOCYTES_83
16.9
MONOCYTES_84
16.6
MONOCYTES_85
16.5
MONOCYTES_86
16.4
MONOCYTES_87
16.4
MONOCYTES_88
16.2
MONOCYTES_89
15.5
MONOCYTES_90
14.5
MONOCYTES_91
14.0
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Non-classical monocyte TPM: 27.2
Samples: 90
Max TPM: 37.1
Min TPM: 14.7
M2_1
37.1
M2_2
34.7
M2_3
34.4
M2_4
34.1
M2_5
34.0
M2_6
33.8
M2_7
33.5
M2_8
33.2
M2_9
32.7
M2_10
32.6
M2_11
32.3
M2_12
32.0
M2_13
31.8
M2_14
31.8
M2_15
31.7
M2_16
31.7
M2_17
31.6
M2_18
31.4
M2_19
31.1
M2_20
31.0
M2_21
31.0
M2_22
30.9
M2_23
30.8
M2_24
30.7
M2_25
30.4
M2_26
30.3
M2_27
30.3
M2_28
30.3
M2_29
30.2
M2_30
30.2
M2_31
30.1
M2_32
30.0
M2_33
29.9
M2_34
29.8
M2_35
29.8
M2_36
29.8
M2_37
29.6
M2_38
29.5
M2_39
29.2
M2_40
29.2
M2_41
29.0
M2_42
28.9
M2_43
28.3
M2_44
28.1
M2_45
27.9
M2_46
27.9
M2_47
27.5
M2_48
27.5
M2_49
27.4
M2_50
27.2
M2_51
27.1
M2_52
26.9
M2_53
26.8
M2_54
26.8
M2_55
26.7
M2_56
26.4
M2_57
26.2
M2_58
26.1
M2_59
25.5
M2_60
25.4
M2_61
25.3
M2_62
25.0
M2_63
24.8
M2_64
24.8
M2_65
24.6
M2_66
24.4
M2_67
24.3
M2_68
24.3
M2_69
24.1
M2_70
23.9
M2_71
23.3
M2_72
23.0
M2_73
23.0
M2_74
23.0
M2_75
22.8
M2_76
22.6
M2_77
21.4
M2_78
21.2
M2_79
21.1
M2_80
20.9
M2_81
20.9
M2_82
20.2
M2_83
18.6
M2_84
18.1
M2_85
18.1
M2_86
17.3
M2_87
16.4
M2_88
15.7
M2_89
15.0
M2_90
14.7
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