A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
21.0
nTPM
Schmiedel:
49.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Memory B-cell nTPM: 1.0
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.5
P10809_1017
0.8
P10809_1025
0.6
P10809_1044
1.8
P10809_1063
0.8
P10809_1092
1.2
P10809_1105
0.5
Naive B-cell nTPM: 0.7
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.3
P10809_1011
0.3
P10809_1029
0.4
P10809_1048
1.3
P10809_1067
1.1
P10809_1091
0.5
P10809_1104
0.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 18.0
Samples: 4
Max nTPM: 30.3
Min nTPM: 4.5
RHH5310_R3677
16.0
RHH5218_R3590
21.3
RHH5247_R3619
4.5
RHH5276_R3648
30.3
Naive B-cell nTPM: 13.9
Samples: 4
Max nTPM: 27.3
Min nTPM: 6.2
RHH5308_R3675
6.2
RHH5216_R3588
9.8
RHH5245_R3617
12.1
RHH5274_R3646
27.3
Non-switched memory B-cell nTPM: 14.7
Samples: 4
Max nTPM: 23.7
Min nTPM: 8.1
RHH5309_R3676
8.1
RHH5217_R3589
13.6
RHH5246_R3618
13.5
RHH5275_R3647
23.7
Plasmablast nTPM: 21.0
Samples: 4
Max nTPM: 26.4
Min nTPM: 17.0
RHH5312_R3679
17.0
RHH5220_R3592
26.4
RHH5249_R3621
19.6
RHH5278_R3650
20.9
Switched memory B-cell nTPM: 17.1
Samples: 4
Max nTPM: 29.6
Min nTPM: 7.9
RHH5311_R3678
7.9
RHH5219_R3591
17.9
RHH5248_R3620
12.9
RHH5277_R3649
29.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.2
Schmiedel sample id
TPM
Naive B-cell TPM: 49.2
Samples: 91
Max TPM: 104.1
Min TPM: 21.0
B_CELL_NAIVE_1
104.1
B_CELL_NAIVE_2
99.0
B_CELL_NAIVE_3
89.9
B_CELL_NAIVE_4
88.1
B_CELL_NAIVE_5
85.5
B_CELL_NAIVE_6
79.4
B_CELL_NAIVE_7
76.3
B_CELL_NAIVE_8
70.5
B_CELL_NAIVE_9
68.0
B_CELL_NAIVE_10
66.2
B_CELL_NAIVE_11
65.6
B_CELL_NAIVE_12
65.5
B_CELL_NAIVE_13
64.5
B_CELL_NAIVE_14
63.3
B_CELL_NAIVE_15
63.1
B_CELL_NAIVE_16
62.8
B_CELL_NAIVE_17
61.8
B_CELL_NAIVE_18
59.5
B_CELL_NAIVE_19
58.0
B_CELL_NAIVE_20
57.5
B_CELL_NAIVE_21
57.2
B_CELL_NAIVE_22
56.7
B_CELL_NAIVE_23
56.4
B_CELL_NAIVE_24
55.6
B_CELL_NAIVE_25
55.2
B_CELL_NAIVE_26
55.0
B_CELL_NAIVE_27
54.4
B_CELL_NAIVE_28
54.1
B_CELL_NAIVE_29
53.7
B_CELL_NAIVE_30
53.6
B_CELL_NAIVE_31
53.3
B_CELL_NAIVE_32
52.5
B_CELL_NAIVE_33
52.1
B_CELL_NAIVE_34
51.7
B_CELL_NAIVE_35
51.6
B_CELL_NAIVE_36
51.5
B_CELL_NAIVE_37
51.4
B_CELL_NAIVE_38
51.0
B_CELL_NAIVE_39
50.0
B_CELL_NAIVE_40
49.8
B_CELL_NAIVE_41
48.8
B_CELL_NAIVE_42
48.6
B_CELL_NAIVE_43
48.1
B_CELL_NAIVE_44
48.0
B_CELL_NAIVE_45
47.9
B_CELL_NAIVE_46
47.6
B_CELL_NAIVE_47
46.9
B_CELL_NAIVE_48
46.4
B_CELL_NAIVE_49
46.2
B_CELL_NAIVE_50
44.8
B_CELL_NAIVE_51
44.3
B_CELL_NAIVE_52
44.3
B_CELL_NAIVE_53
44.1
B_CELL_NAIVE_54
43.6
B_CELL_NAIVE_55
43.2
B_CELL_NAIVE_56
42.4
B_CELL_NAIVE_57
42.3
B_CELL_NAIVE_58
41.4
B_CELL_NAIVE_59
41.0
B_CELL_NAIVE_60
40.7
B_CELL_NAIVE_61
40.6
B_CELL_NAIVE_62
40.4
B_CELL_NAIVE_63
40.3
B_CELL_NAIVE_64
39.8
B_CELL_NAIVE_65
39.6
B_CELL_NAIVE_66
39.3
B_CELL_NAIVE_67
39.3
B_CELL_NAIVE_68
39.0
B_CELL_NAIVE_69
38.9
B_CELL_NAIVE_70
37.8
B_CELL_NAIVE_71
37.4
B_CELL_NAIVE_72
36.2
B_CELL_NAIVE_73
36.1
B_CELL_NAIVE_74
36.1
B_CELL_NAIVE_75
34.6
B_CELL_NAIVE_76
34.5
B_CELL_NAIVE_77
34.5
B_CELL_NAIVE_78
33.4
B_CELL_NAIVE_79
32.8
B_CELL_NAIVE_80
32.7
B_CELL_NAIVE_81
32.6
B_CELL_NAIVE_82
32.4
B_CELL_NAIVE_83
32.2
B_CELL_NAIVE_84
31.3
B_CELL_NAIVE_85
29.9
B_CELL_NAIVE_86
29.5
B_CELL_NAIVE_87
28.8
B_CELL_NAIVE_88
28.5
B_CELL_NAIVE_89
28.1
B_CELL_NAIVE_90
25.0
B_CELL_NAIVE_91
21.0
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
